[Bioc-devel] GenomeInfoDb::Seqinfo() failing with 404 error

Raymond Cavalcante rcavalca at umich.edu
Thu Jan 26 03:28:37 CET 2017


I'm suddenly encountering errors with GenomeInfoDb::Seqinfo():

> > GenomeInfoDb::Seqinfo(genome='hg19')
> Error in file(file, "rt") : cannot open connection
> In addition: Warning message:
> In file(file, "rt") :
>   URL 'https://ftp.ncbi.nlm.nih.gov/genomes/ASSEMBLY_REPORTS/All/GCF_000001405.13.assembly.txt': status was '404 Not Found'

I'm not sure how to fix this issue, as it seems to be more of an NCBI problem. Any help would be greatly appreciated.

Raymond Cavalcante

More information about the Bioc-devel mailing list