[Bioc-devel] GenomeInfoDb::Seqinfo() failing with 404 error

Obenchain, Valerie Valerie.Obenchain at roswellpark.org
Thu Jan 26 05:01:07 CET 2017


Thanks for the report. It looks like the directory structure has
changed. I'll work on this tomorrow and will post back when it's fixed.

Valerie


On 01/25/2017 06:29 PM, Raymond Cavalcante wrote:
> Hello,
>
> I'm suddenly encountering errors with GenomeInfoDb::Seqinfo():
>
>>> GenomeInfoDb::Seqinfo(genome='hg19')
>> Error in file(file, "rt") : cannot open connection
>> In addition: Warning message:
>> In file(file, "rt") :
>>   URL 'https://ftp.ncbi.nlm.nih.gov/genomes/ASSEMBLY_REPORTS/All/GCF_000001405.13.assembly.txt': status was '404 Not Found'
> I'm not sure how to fix this issue, as it seems to be more of an NCBI problem. Any help would be greatly appreciated.
>
> Thanks,
> Raymond Cavalcante
> _______________________________________________
> Bioc-devel at r-project.org mailing list
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>



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