[Bioc-devel] GenomeInfoDb::Seqinfo() failing with 404 error

Obenchain, Valerie Valerie.Obenchain at roswellpark.org
Thu Jan 26 05:01:07 CET 2017

Thanks for the report. It looks like the directory structure has
changed. I'll work on this tomorrow and will post back when it's fixed.


On 01/25/2017 06:29 PM, Raymond Cavalcante wrote:
> Hello,
> I'm suddenly encountering errors with GenomeInfoDb::Seqinfo():
>>> GenomeInfoDb::Seqinfo(genome='hg19')
>> Error in file(file, "rt") : cannot open connection
>> In addition: Warning message:
>> In file(file, "rt") :
>>   URL 'https://ftp.ncbi.nlm.nih.gov/genomes/ASSEMBLY_REPORTS/All/GCF_000001405.13.assembly.txt': status was '404 Not Found'
> I'm not sure how to fix this issue, as it seems to be more of an NCBI problem. Any help would be greatly appreciated.
> Thanks,
> Raymond Cavalcante
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel

This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.

More information about the Bioc-devel mailing list