[Bioc-devel] GenomeInfoDb::Seqinfo() failing with 404 error

Hervé Pagès hpages at fredhutch.org
Wed Feb 1 21:32:39 CET 2017

Hi Raymond,

On 02/01/2017 04:39 AM, Raymond Cavalcante wrote:
> Hello,
> I was wondering if any progress has been made on fixing this? I looked through recent commits for GenomeInfoDb, but there didn't seem to be anything related to this problem.

Not yet. Please expect a couple more days before this is resolved.

Thanks for your patience,

> Thanks,
> Raymond
>> On Jan 25, 2017, at 23:01, Obenchain, Valerie <Valerie.Obenchain at RoswellPark.org> wrote:
>> Thanks for the report. It looks like the directory structure has
>> changed. I'll work on this tomorrow and will post back when it's fixed.
>> Valerie
>>> On 01/25/2017 06:29 PM, Raymond Cavalcante wrote:
>>> Hello,
>>> I'm suddenly encountering errors with GenomeInfoDb::Seqinfo():
>>>>> GenomeInfoDb::Seqinfo(genome='hg19')
>>>> Error in file(file, "rt") : cannot open connection
>>>> In addition: Warning message:
>>>> In file(file, "rt") :
>>>>  URL 'https://ftp.ncbi.nlm.nih.gov/genomes/ASSEMBLY_REPORTS/All/GCF_000001405.13.assembly.txt': status was '404 Not Found'
>>> I'm not sure how to fix this issue, as it seems to be more of an NCBI problem. Any help would be greatly appreciated.
>>> Thanks,
>>> Raymond Cavalcante
>>> _______________________________________________
>>> Bioc-devel at r-project.org mailing list
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Hervé Pagès

Program in Computational Biology
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