[Bioc-devel] Git transition is happening August 16th.

[Martin Morgan]

Thanks Charles and Taigo, this should be fixed now. If not, can you 
re-open and comment on

   https://github.com/Bioconductor/bioc_git_transition/issues/34

? Thanks!

Martin

On 08/18/2017 02:36 PM, Tiago Chedraoui Silva wrote:
> Any git command sending messages to the git server gave that warning.
> /git push upstream master/ is an example.
> ​
> 
> 
> ​
> 
> Tiago Chedraoui Silva
> 
> On Fri, Aug 18, 2017 at 9:24 AM, Martin Morgan 
> <martin.morgan at roswellpark.org <mailto:martin.morgan at roswellpark.org>> 
> wrote:
> 
>     On 08/18/2017 12:21 PM, Tiago Chedraoui Silva wrote:
> 
>         I had the same problem, which is described below:
>         https://askubuntu.com/questions/144235/locale-variables-have-no-effect-in-remote-shell-perl-warning-setting-locale-f
>         <https://askubuntu.com/questions/144235/locale-variables-have-no-effect-in-remote-shell-perl-warning-setting-locale-f>
> 
>         I did the "Stop forwarding locale from the client" solution and
>         it worked.
> 
> 
>     yes, but to solve this for other people generally can you tell me
>     what you did to see the message? git clone
>     git at git.bioconductor.org:pacakges/TCGAbiolinks ? git status ? ... ?
>     Thanks
> 
> 
>         Best regards,
>         Tiago Chedraoui Silva
> 
>         On Fri, Aug 18, 2017 at 8:35 AM, Martin Morgan
>         <martin.morgan at roswellpark.org
>         <mailto:martin.morgan at roswellpark.org>
>         <mailto:martin.morgan at roswellpark.org
>         <mailto:martin.morgan at roswellpark.org>>> wrote:
> 
>              On 08/16/2017 08:45 PM, Charles Plessy wrote:
> 
>                  Le Wed, Aug 16, 2017 at 08:30:22PM +0000, Turaga,
>         Nitesh a écrit :
> 
> 
>                      The Bioconductor git server is now alive!! All future
>                      commits to Software and Data experiment packages
>         should be
>                      made to the git server.
> 
>                      Please see the documentation on how to use the new
>         server
>         https://www.bioconductor.org/developers/how-to/git/
>         <https://www.bioconductor.org/developers/how-to/git/>
>                     
>         <https://www.bioconductor.org/developers/how-to/git/
>         <https://www.bioconductor.org/developers/how-to/git/>>.
> 
>                      If your package has been available through SVN
>         remember to
>                      submit your SSH keys to
>         https://goo.gl/forms/eg36vcBkIUjfZfLe2
>         <https://goo.gl/forms/eg36vcBkIUjfZfLe2>
>                      <https://goo.gl/forms/eg36vcBkIUjfZfLe2
>         <https://goo.gl/forms/eg36vcBkIUjfZfLe2>>.
> 
> 
>                      NOTE: Workflow packages will remain on SVN for the
>         moment.
> 
> 
>                  Many thanks for this transition !
> 
>                  I have a minor thing to report: when running "git pull"
>         with a
>                  non-C and non-US
>                  locale, the remote server issues unimportant warning
>         messages
>                  from perl.
> 
>                  perl: warning: Setting locale failed.
>                  perl: warning: Please check that your locale settings:
>                           LANGUAGE = (unset),
>                           LC_ALL = (unset),
>                           LC_TIME = "en_GB.UTF-8",
>                           LC_MONETARY = "en_GB.UTF-8",
>                           LC_MEASUREMENT = "en_GB.UTF-8",
>                           LC_NUMERIC = "en_GB.UTF-8",
>                           LC_PAPER = "en_GB.UTF-8",
>                           LANG = "en_US.UTF-8"
>                        are supported and installed on your system.
>                  perl: warning: Falling back to a fallback locale
>         ("en_US.UTF-8").
> 
>                  Obviously, client-side LC_ALL=C suppresses this, but
>         perhaps it
>                  can be silenced
>                  server-side, either by supporting many locales, or
>         enforcing the
>                  default C
>                  locale without warning.
> 
> 
>              Hi Charles -- can you clarify a little what you are doing
>         to get
>              this response? git clone git... ? or ??
> 
>              Thanks, Martin
> 
> 
> 
>                  Have a nice day,
> 
>                  Charles
> 
> 
> 
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