[Bioc-devel] Git transition is happening August 16th.

Tiago Chedraoui Silva tiagochst at gmail.com
Fri Aug 18 18:21:50 CEST 2017


I had the same problem, which is described below:
https://askubuntu.com/questions/144235/locale-variables-have-no-effect-in-remote-shell-perl-warning-setting-locale-f

I did the "Stop forwarding locale from the client" solution and it worked.

Best regards,
Tiago Chedraoui Silva

On Fri, Aug 18, 2017 at 8:35 AM, Martin Morgan <
martin.morgan at roswellpark.org> wrote:

> On 08/16/2017 08:45 PM, Charles Plessy wrote:
>
>> Le Wed, Aug 16, 2017 at 08:30:22PM +0000, Turaga, Nitesh a écrit :
>>
>>>
>>> The Bioconductor git server is now alive!! All future commits to
>>> Software and Data experiment packages should be made to the git server.
>>>
>>> Please see the documentation on how to use the new server
>>> https://www.bioconductor.org/developers/how-to/git/.
>>>
>>> If your package has been available through SVN remember to submit your
>>> SSH keys to https://goo.gl/forms/eg36vcBkIUjfZfLe2.
>>>
>>> NOTE: Workflow packages will remain on SVN for the moment.
>>>
>>
>> Many thanks for this transition !
>>
>> I have a minor thing to report: when running "git pull" with a non-C and
>> non-US
>> locale, the remote server issues unimportant warning messages from perl.
>>
>> perl: warning: Setting locale failed.
>> perl: warning: Please check that your locale settings:
>>         LANGUAGE = (unset),
>>         LC_ALL = (unset),
>>         LC_TIME = "en_GB.UTF-8",
>>         LC_MONETARY = "en_GB.UTF-8",
>>         LC_MEASUREMENT = "en_GB.UTF-8",
>>         LC_NUMERIC = "en_GB.UTF-8",
>>         LC_PAPER = "en_GB.UTF-8",
>>         LANG = "en_US.UTF-8"
>>      are supported and installed on your system.
>> perl: warning: Falling back to a fallback locale ("en_US.UTF-8").
>>
>> Obviously, client-side LC_ALL=C suppresses this, but perhaps it can be
>> silenced
>> server-side, either by supporting many locales, or enforcing the default C
>> locale without warning.
>>
>
> Hi Charles -- can you clarify a little what you are doing to get this
> response? git clone git... ? or ??
>
> Thanks, Martin
>
>
>
>> Have a nice day,
>>
>> Charles
>>
>>
>
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>
>
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