[Bioc-devel] Git transition is happening August 16th.

Martin Morgan martin.morgan at roswellpark.org
Fri Aug 18 17:35:00 CEST 2017

On 08/16/2017 08:45 PM, Charles Plessy wrote:
> Le Wed, Aug 16, 2017 at 08:30:22PM +0000, Turaga, Nitesh a écrit :
>> The Bioconductor git server is now alive!! All future commits to Software and Data experiment packages should be made to the git server.
>> Please see the documentation on how to use the new server https://www.bioconductor.org/developers/how-to/git/.
>> If your package has been available through SVN remember to submit your SSH keys to https://goo.gl/forms/eg36vcBkIUjfZfLe2.
>> NOTE: Workflow packages will remain on SVN for the moment.
> Many thanks for this transition !
> I have a minor thing to report: when running "git pull" with a non-C and non-US
> locale, the remote server issues unimportant warning messages from perl.
> perl: warning: Setting locale failed.
> perl: warning: Please check that your locale settings:
> 	LANGUAGE = (unset),
> 	LC_ALL = (unset),
> 	LC_TIME = "en_GB.UTF-8",
> 	LC_MONETARY = "en_GB.UTF-8",
> 	LC_NUMERIC = "en_GB.UTF-8",
> 	LC_PAPER = "en_GB.UTF-8",
> 	LANG = "en_US.UTF-8"
>      are supported and installed on your system.
> perl: warning: Falling back to a fallback locale ("en_US.UTF-8").
> Obviously, client-side LC_ALL=C suppresses this, but perhaps it can be silenced
> server-side, either by supporting many locales, or enforcing the default C
> locale without warning.

Hi Charles -- can you clarify a little what you are doing to get this 
response? git clone git... ? or ??

Thanks, Martin

> Have a nice day,
> Charles

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