[Bioc-devel] Error in tokay2

[Obenchain, Valerie]

Hi Andrea,

You can ignore the 'Biobase not found' error. It is a reoccurring
problem on the windows builders and we're trying to hunt it down.

Valerie





On 04/14/2017 01:04 AM, Rodriguez Martinez, Andrea wrote:
> Hello,
>
>
> I also have an error with tokay2 in the release branch (not in devel) of my package MetaboSignal. It's an error that I have seen before:
>
> Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
>   there is no package called 'Biobase'
>
> From what I was told another time, this seems to be a general problem with the system.
>
>
> Best,
>
>
> Andrea
>
>
> ________________________________
> From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Romero, Juan Pablo <jpromero at ceit.es>
> Sent: 14 April 2017 08:40:47
> To: bioc-devel at r-project.org
> Subject: [Bioc-devel] Error in tokay2
>
> Hello all,
>
>
> I know that today is the deadline for passing R CMD build and R CMD check without errors and warnings, and my package EventPointer has been working perfectly for the last weeks.
>
>
> Today the build report in tokay2 shows an error in one of the examples:
>
>
> ** running examples for arch 'x64' ... ERROR
>
>
> Make the TxDb object ... Error in if (file.exists(dest) && file.mtime(dest) > file.mtime(lib) &&  :
>   missing value where TRUE/FALSE needed
>
>
> The error is coming from the function makeTxDbFromGFF and the error does not come from functions from
>
> my package.
>
>
> Is anybody having a similar error?
>
>
> I will appreciate any help on this to avoid problems related with adding the package to the new release.
>
>
> Thanks!
>
>
> Best regards,
>
>
> Juan Pablo
>
>
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>
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