[Bioc-devel] Error in tokay2

Rodriguez Martinez, Andrea andrea.rodriguez-martinez13 at imperial.ac.uk
Fri Apr 14 10:04:13 CEST 2017


I also have an error with tokay2 in the release branch (not in devel) of my package MetaboSignal. It's an error that I have seen before:

Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
  there is no package called 'Biobase'

>From what I was told another time, this seems to be a general problem with the system.



From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Romero, Juan Pablo <jpromero at ceit.es>
Sent: 14 April 2017 08:40:47
To: bioc-devel at r-project.org
Subject: [Bioc-devel] Error in tokay2

Hello all,

I know that today is the deadline for passing R CMD build and R CMD check without errors and warnings, and my package EventPointer has been working perfectly for the last weeks.

Today the build report in tokay2 shows an error in one of the examples:

** running examples for arch 'x64' ... ERROR

Make the TxDb object ... Error in if (file.exists(dest) && file.mtime(dest) > file.mtime(lib) &&  :
  missing value where TRUE/FALSE needed

The error is coming from the function makeTxDbFromGFF and the error does not come from functions from

my package.

Is anybody having a similar error?

I will appreciate any help on this to avoid problems related with adding the package to the new release.


Best regards,

Juan Pablo

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