[Bioc-devel] TxDbs for Bioconductor 3.4

Obenchain, Valerie Valerie.Obenchain at roswellpark.org
Thu Sep 29 23:35:42 CEST 2016


The TxDbs for Bioconductor 3.4 are built and available in the devel branch.

One new package has been added (version 3.4):
TxDb.Ptroglodytes.UCSC.rheMac8.refGene

These packages are live tracks and have been updated (bumped to version
3.4):
TxDb.Celegans.UCSC.ce11.refGene
TxDb.Hsapiens.UCSC.hg38.knownGene
TxDb.Mmusculus.UCSC.mm10.knownGene
TxDb.Mmusculus.UCSC.mm10.ensGene
TxDb.Rnorvegicus.UCSC.rn5.refGene
TxDb.Rnorvegicus.UCSC.rn6.refGene
TxDb.Rnorvegicus.UCSC.bosTau8.refGene
TxDb.Sscrofa.UCSC.susScr3.refGene
TxDb.Ptroglodytes.UCSC.panTro4.refGene
TxDb.Drerio.UCSC.danRer10.refGene
TxDb.Ptroglodytes.UCSC.rheMac3.refGene
TxDb.Ptroglodytes.UCSC.galGal4.refGene

The other TxDb packages are either retired tracks or have not been
updated since the last release; those versions will not be bumped.

Let me know if you have questions or experience problems with the updates.
Thanks.
Valerie





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