[Bioc-devel] Change in the function getHPa( ) of the hpar package

Rodriguez Martinez, Andrea andrea.rodriguez-martinez13 at imperial.ac.uk
Thu Sep 29 17:04:20 CEST 2016

Thanks very much! It's nice to see that you've added gene symbols to the new hpaNormalTissue dataset.

Best wishes,

From: Laurent Gatto <lg390 at cam.ac.uk>
Sent: 29 September 2016 16:01:57
To: Rodriguez Martinez, Andrea
Cc: bioc-devel at r-project.org
Subject: Re: [Bioc-devel] Change in the function getHPa( ) of the hpar package

Dear Andrea,

There won't be any additional changes to the hpar package before the
upcoming release. A new version of the HPA data is expected by the end
of the year, but that should not lead to any changes to the interface.

Best wishes,


On 29 September 2016 15:24, Rodriguez Martinez, Andrea wrote:

> Hi,
> I've just noticed that the function getHPa package has recently
> changed in the devel branch of the package, as follows:
> # Old function (in the current release branch)
> getHpa(id, hpadata = "NormalTissue")
> #New function (in the current devel branch)
> getHpa(id, hpadata = "hpaNormalTissue")
> A function of my package (MetaboSignal) uses this function from the
> hpar package, so today I had to update my code according to this
> modification of the getHpa function. I just wanted to confirm that the
> next release version of hpar is going to keep this new version of the
> getHpa function. Otherwise, I guess this might cause trouble with the
> upcoming release version of MetaboSignal. Would it be worthy to write
> my own getHpa function to avoid this kind of problems ?
> Thanks very much in advance,
> Andrea
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Laurent Gatto | @lgatt0

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