[Bioc-devel] Question about InteractionSet package

[Dan Tenenbaum]

Oops, sorry, my bad.

I read the warning and thought it was trying to install the package from CRAN, but I was just reading it wrong, that warning is irrelevant to your situation.

Sounds like your situation is resolved based on your off-list email to me.

Dan


----- Original Message -----
> From: "Dan Tenenbaum" <dtenenba at fredhutch.org>
> To: "Ioannis Vardaxis" <ioannis.vardaxis at math.ntnu.no>
> Cc: "bioc-devel" <bioc-devel at r-project.org>
> Sent: Friday, October 21, 2016 10:44:26 AM
> Subject: Re: [Bioc-devel] Question about InteractionSet package

> You need to tell us the command that produced that error.
> 
> InteractionSet is a Bioconductor package, not a CRAN package. Maybe you tried to
> install it with install.packages() instead of biocLite()?
> 
> See the "Installlation" section of
> 
> https://bioconductor.org/packages/release/bioc/html/InteractionSet.html
> 
> Dan
> 
> 
> ----- Original Message -----
>> From: "Ioannis Vardaxis" <ioannis.vardaxis at math.ntnu.no>
>> To: "bioc-devel" <bioc-devel at r-project.org>
>> Sent: Friday, October 21, 2016 7:07:30 AM
>> Subject: [Bioc-devel] Question about InteractionSet package
> 
>> Hi,
>> 
>> I am currently developing a package which I want to submit to Bioconductor. I am
>> using the R-devel version. I am trying  to install the InteractionSet package
>> with no success. I get the following warnings:
>> 
>> Warning: unable to access index for repository
>> https://cran.rstudio.com/bin/macosx/mavericks/contrib/3.4:
>> Package which is only available in source form, and may need compilation of
>> C/C++/Fortran:
>>  'InteractionSet'
>> Do you want to attempt to install these from sources?
>> y/n:
>> 
>> Even if I answer y, the package is not installed. Is there any possible solution
>> to the problem?
>> 
>> 
>> Best,
>> Ioannis
>> --
>> Ioannis Vardaxis
>> Stipendiat IMF
>> NTNU
>> 
>>	[[alternative HTML version deleted]]
>> 
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