[Bioc-devel] biocLite and useDevel

Dan Tenenbaum dtenenba at fredhutch.org
Fri Oct 14 20:31:08 CEST 2016


Probably related to:

https://stat.ethz.ch/pipermail/bioc-devel/2016-October/009897.html

Dan


----- Original Message -----
> From: "Kasper Daniel Hansen" <kasperdanielhansen at gmail.com>
> To: "bioc-devel" <bioc-devel at r-project.org>
> Sent: Friday, October 14, 2016 9:07:34 AM
> Subject: [Bioc-devel] biocLite and useDevel

> This is unexpected, to me at least (below).  I source biocLite and set
> useDevel(TRUE) and it does not switch to current devel branch.  Perhaps
> this has to do with branches and stuff.  Breaks current Travis setup.
> Perhaps this is just a hiccup which will go away.
> 
> # R-3.3
> 
> R version 3.3.1 RC (2016-06-14 r70789) -- "Bug in Your Hair"
> Copyright (C) 2016 The R Foundation for Statistical Computing
> Platform: x86_64-apple-darwin15.5.0 (64-bit)
> 
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> You are welcome to redistribute it under certain conditions.
> Type 'license()' or 'licence()' for distribution details.
> 
>  Natural language support but running in an English locale
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> Type 'contributors()' for more information and
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> Type 'demo()' for some demos, 'help()' for on-line help, or
> 'help.start()' for an HTML browser interface to help.
> Type 'q()' to quit R.
> 
>> source("http://www.bioconductor.org/biocLite.R")
> Bioconductor version 3.3 (BiocInstaller 1.22.3), ?biocLite for help
>> useDevel(TRUE)
> Installing package into ‘/usr/local/R/R-3.3/lib/R/site-library’
> (as ‘lib’ is unspecified)
> Bioconductor version 3.3 (BiocInstaller 1.22.3), ?biocLite for help
> 'BiocInstaller' changed to version 1.22.3
> 
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