[Bioc-devel] A handful of check to follow up on R CMD BiocCheck

[Kasper Daniel Hansen]

I would prefer all line numbers reported, but on the other hand I am
indifferent wrt. the content of the line, unless (say) TABs are marked up
somehow.

Kasper

On Wed, Nov 2, 2016 at 3:17 PM, Martin Morgan <martin.morgan at roswellpark.org
> wrote:

> On 11/02/2016 02:49 PM, Kevin RUE wrote:
>
>> Dear all,
>>
>> Just thought I'd share a handful of scripts that I wrote to follow up on
>> certain NOTE messages thrown by R CMD BiocCheck.
>>
>> https://github.com/kevinrue/BiocCheckTools
>>
>> They're very simple, but I occasionally find them quite convenient.
>> Apologies if something similar already exists somewhere :)
>>
>
> Maybe consider creating a diff against the source code that, e.g.,
> reported the first 6 offenders? The relevant lines are near
>
> https://github.com/Bioconductor-mirror/BiocCheck/blob/
> master/R/checks.R#L1081
>
> Martin
>
>
>> All the best,
>> Kevin
>>
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>>
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