[Bioc-devel] ExperimentHub::GSE62944 outdated

[Obenchain, Valerie]

Hi,

Yes, please share your scripts with Sonali since (I think) she will be
putting the data together.

Valerie


On 06/04/2016 05:56 AM, Marini, Federico wrote:
> Hi Valerie,
>
> This is true. I also did the same thing for the normal samples, this as well already as SummarizedExperiment.
>
> I can check in my scripts once I am back in the office, if you want to use it as a starter.
>
> Cheers,
> Federico
>
> ________________________________________
> From: Obenchain, Valerie <Valerie.Obenchain at RoswellPark.org>
> Sent: Friday, June 3, 2016 5:28 PM
> To: Ludwig Geistlinger; bioc-devel at r-project.org
> Cc: Marini, Federico; Sonali Arora
> Subject: Re: [Bioc-devel] ExperimentHub::GSE62944 outdated
>
> Hi Ludwig and Federico,
>
> Yes, we plan to update these data in the next couple of weeks.
>
> Sonali mentioned that the current data only include the tumor samples
> and she'd like to add the normals. The new data will likely be added as
> SummarizedExperiment objects instead of ExpressionSets.
>
> Valerie
>
>
> On 06/03/2016 04:57 AM, Ludwig Geistlinger wrote:
>> FYI
>>
>> That works for me, but maybe this is also of interest for others, so I
>> wonder if somebody of the Bioc annotation/experiment team (Sonali,
>> Valerie, Martin?) could update this accordingly for ExperimentHub?
>>
>> Best,
>> Ludwig
>>
>
>
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