[Bioc-devel] Cannot update the release in svn
tiphaine.martin at kcl.ac.uk
Thu Jun 2 23:28:44 CEST 2016
Sorry to answer only now, but I was busy to finish a paper in time.
So I did it as you said and everything goes well.
and the function "git svn dcommit --add-author-from"
r118127 = 3f9d47140ab77cf30381c5afa24007967ce3a615 (refs/remotes/git-svn-release-3.3)
No changes between 7019708a1dcfbe8759b8107fcb20823167d43c08 and refs/remotes/git-svn-release-3.3
Resetting to the latest refs/remotes/git-svn-release-3.3
So I did then 2 last commands
git checkout version-1.4.3_release-3.3
git merge release-3.3
But I didn't see modification on my fork of gitHub and when I go back to "release-3.3" (I run git checkout release-3.3), I have this message
Switched to branch 'release-3.3'
Your branch is ahead of 'bioc/release-3.3' by 7 commits.
(use "git push" to publish your local commits)
Should I push them on the remote or something else ?
PhD Research Student | King's College
The Department of Twin Research & Genetic Epidemiology | Genetics & Molecular Medicine Division
St Thomas' Hospital
4th Floor, Block D, South Wing
SE1 7EH, London
email : tiphaine.martin at kcl.ac.uk
Fax: +44 (0) 207 188 6761
From: Dan Tenenbaum <dtenenba at fredhutch.org>
Sent: 30 May 2016 02:36
To: Martin, Tiphaine
Subject: Re: [Bioc-devel] Cannot update the release in svn
----- Original Message -----
> From: "Tiphaine Martin" <tiphaine.martin at kcl.ac.uk>
> To: "bioc-devel" <Bioc-devel at r-project.org>
> Sent: Sunday, May 29, 2016 2:54:20 PM
> Subject: [Bioc-devel] Cannot update the release in svn
> I cleaned my gitHub repository to have now the repository coMET in my gitHub as
> the fork of coMET from bioconductor.
> I followed the directive from
> as I need to correct bug in the current release
> but when I try to run
> 1. git svn rebase to get the latest SVN changes.
> I have an error message
> git svn rebase
> Authentication realm: <https://hedgehog.fhcrc.org:443> The bioconductor
> Subversion Repository
> Password for 'tiphaine':
> Can't create session: Unable to connect to a repository at URL
> Unexpected server error 500 'Internal Server Error' on
> '/bioconductor/branches/RELEASE_3_3/madman/Rpacks/coMET' at
> /usr/share/perl5/Git/SVN.pm line 712.
> So I cannot push my update in SVN.
> Can you tell me if the bug is still on my side or on the side of svn of
> bioconductor? and what I need to do to push my update.
"git svn" relies on svn's authentication mechanisms. So svn has to already know about your credentials.
Also, note that your svn username is 't.martin', not 'tiphaine' (which I guess is the username that you are logged into your computer as).
So you need to let svn know about your credentials, so do something like this:
svn log --limit 1 --username t.martin https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/coMET
This will prompt for your svn password and might also ask you if it is ok to store your credentials on your computer in cleartext. You should answer 'y' to the questions it asks you.
After doing this you should be able to successfully run the 'git svn rebase' command.
> Tiphaine Martin
> PhD Research Student | King's College
> The Department of Twin Research & Genetic Epidemiology | Genetics & Molecular
> Medicine Division
> St Thomas' Hospital
> 4th Floor, Block D, South Wing
> SE1 7EH, London
> United Kingdom
> email : tiphaine.martin at kcl.ac.uk
> Fax: +44 (0) 207 188 6761
> [[alternative HTML version deleted]]
> Bioc-devel at r-project.org mailing list
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