[Bioc-devel] shrunken vignette

[Dan Tenenbaum]

Also note that the build system does not use devtools to build vignettes, it uses R CMD build.


----- Original Message -----
> From: "Kasper Daniel Hansen" <kasperdanielhansen at gmail.com>
> To: "Anand MT" <anand_mt at hotmail.com>
> Cc: "bioc-devel" <bioc-devel at r-project.org>
> Sent: Friday, July 15, 2016 8:43:00 PM
> Subject: Re: [Bioc-devel] shrunken vignette

> If you add a sessionInfo() section to your document (which I highly
> recommend) you'll probably realize the two versions are using different
> versions of BiocStyle (anything in devel uses BiocStyle level).  The
> default layout is changing, and I am sure comments or bug reports are
> welcome.  For example, as rendered right now I would agree the TOC sucks.
> 
> Best,
> Kasper
> 
> On Fri, Jul 15, 2016 at 9:53 PM, Anand MT <anand_mt at hotmail.com> wrote:
> 
>> Hi all,
>> My package 'maftools' finally found its homepage today. But when I checked
>> the vignette, it has been shrunken. It appears to be html vignette is
>> center aligned rather than left aligned. It makes things cluttered and and
>> toc looks messy.
>> Vignette is here:
>> http://bioconductor.org/packages/devel/bioc/vignettes/maftools/inst/doc/maftools.html
>> When I build it manually on my computer with devtools::build_vignettes()
>> it looks like this. http://poisonalien.github.io   - A much cleaner look.
>> Do I need to change any thing in markdown file?
>> Meta data on my vignette markdown looks like this.
>> ---title: "maftools : Summarize, Analyze and Visualize MAF files"author:
>> "Anand Mayakonda"date: "`r Sys.Date()`"output:
>> BiocStyle::html_document2vignette: >  %\VignetteIndexEntry{Summarize,
>> Analyze and Visualize MAF files}  %\VignetteEngine{knitr::rmarkdown}
>> %\VignetteEncoding{UTF-8}---
>>
>> Thank you.
>>
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>>
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>>
> 
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