[Bioc-devel] shrunken vignette

Kasper Daniel Hansen kasperdanielhansen at gmail.com
Sat Jul 16 05:43:00 CEST 2016

If you add a sessionInfo() section to your document (which I highly
recommend) you'll probably realize the two versions are using different
versions of BiocStyle (anything in devel uses BiocStyle level).  The
default layout is changing, and I am sure comments or bug reports are
welcome.  For example, as rendered right now I would agree the TOC sucks.


On Fri, Jul 15, 2016 at 9:53 PM, Anand MT <anand_mt at hotmail.com> wrote:

> Hi all,
> My package 'maftools' finally found its homepage today. But when I checked
> the vignette, it has been shrunken. It appears to be html vignette is
> center aligned rather than left aligned. It makes things cluttered and and
> toc looks messy.
> Vignette is here:
> http://bioconductor.org/packages/devel/bioc/vignettes/maftools/inst/doc/maftools.html
> When I build it manually on my computer with devtools::build_vignettes()
> it looks like this. http://poisonalien.github.io   - A much cleaner look.
> Do I need to change any thing in markdown file?
> Meta data on my vignette markdown looks like this.
> ---title: "maftools : Summarize, Analyze and Visualize MAF files"author:
> "Anand Mayakonda"date: "`r Sys.Date()`"output:
> BiocStyle::html_document2vignette: >  %\VignetteIndexEntry{Summarize,
> Analyze and Visualize MAF files}  %\VignetteEngine{knitr::rmarkdown}
> %\VignetteEncoding{UTF-8}---
> Thank you.
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