[Bioc-devel] shrunken vignette

[Anand MT]

Hi Dan and Kasper,
Thank you. I will add sessionInfo. vignette built with R CMD build also looks good with cleaner toc. Maybe its the devel BiocStyle level as suggested. So no way to change it now?

> Date: Fri, 15 Jul 2016 20:46:01 -0700
> From: dtenenba at fredhutch.org
> To: kasperdanielhansen at gmail.com
> CC: anand_mt at hotmail.com; bioc-devel at r-project.org
> Subject: Re: [Bioc-devel] shrunken vignette
> 
> Also note that the build system does not use devtools to build vignettes, it uses R CMD build.
> 
> 
> ----- Original Message -----
> > From: "Kasper Daniel Hansen" <kasperdanielhansen at gmail.com>
> > To: "Anand MT" <anand_mt at hotmail.com>
> > Cc: "bioc-devel" <bioc-devel at r-project.org>
> > Sent: Friday, July 15, 2016 8:43:00 PM
> > Subject: Re: [Bioc-devel] shrunken vignette
> 
> > If you add a sessionInfo() section to your document (which I highly
> > recommend) you'll probably realize the two versions are using different
> > versions of BiocStyle (anything in devel uses BiocStyle level).  The
> > default layout is changing, and I am sure comments or bug reports are
> > welcome.  For example, as rendered right now I would agree the TOC sucks.
> > 
> > Best,
> > Kasper
> > 
> > On Fri, Jul 15, 2016 at 9:53 PM, Anand MT <anand_mt at hotmail.com> wrote:
> > 
> >> Hi all,
> >> My package 'maftools' finally found its homepage today. But when I checked
> >> the vignette, it has been shrunken. It appears to be html vignette is
> >> center aligned rather than left aligned. It makes things cluttered and and
> >> toc looks messy.
> >> Vignette is here:
> >> http://bioconductor.org/packages/devel/bioc/vignettes/maftools/inst/doc/maftools.html
> >> When I build it manually on my computer with devtools::build_vignettes()
> >> it looks like this. http://poisonalien.github.io   - A much cleaner look.
> >> Do I need to change any thing in markdown file?
> >> Meta data on my vignette markdown looks like this.
> >> ---title: "maftools : Summarize, Analyze and Visualize MAF files"author:
> >> "Anand Mayakonda"date: "`r Sys.Date()`"output:
> >> BiocStyle::html_document2vignette: >  %\VignetteIndexEntry{Summarize,
> >> Analyze and Visualize MAF files}  %\VignetteEngine{knitr::rmarkdown}
> >> %\VignetteEncoding{UTF-8}---
> >>
> >> Thank you.
> >>
> >>         [[alternative HTML version deleted]]
> >>
> >> _______________________________________________
> >> Bioc-devel at r-project.org mailing list
> >> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >>
> > 
> >	[[alternative HTML version deleted]]
> > 
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