[Bioc-devel] package passes R CMD BUILD on Linux (Ubuntu) but not Windows Server 2008

[Dan Tenenbaum]

So it turns out there is not going to be a build report for windows in devel today, for an unrelated reason. But it should be ok in tomorrow's build.

Dan


----- Original Message -----
> From: "Samuel E Zimmerman" <sezimmer at einstein.yu.edu>
> To: "Dan Tenenbaum" <dtenenba at fredhutch.org>
> Cc: "bioc-devel" <bioc-devel at r-project.org>
> Sent: Wednesday, January 27, 2016 10:14:55 AM
> Subject: RE: [Bioc-devel] package passes R CMD BUILD on Linux (Ubuntu) but not Windows Server 2008

> Great. Thank you for the quick reply and solution!
> 
> Sam
> ________________________________________
> From: Dan Tenenbaum [dtenenba at fredhutch.org]
> Sent: Wednesday, January 27, 2016 11:43 AM
> To: Samuel E Zimmerman
> Cc: bioc-devel
> Subject: Re: [Bioc-devel] package passes R CMD BUILD on Linux (Ubuntu) but not
> Windows Server 2008
> 
> ----- Original Message -----
>> From: "Samuel E Zimmerman" <sezimmer at einstein.yu.edu>
>> To: "bioc-devel" <bioc-devel at r-project.org>
>> Sent: Wednesday, January 27, 2016 8:35:24 AM
>> Subject: [Bioc-devel] package passes R CMD BUILD on Linux (Ubuntu) but not
>> Windows Server 2008
> 
>> Hi Everyone,
>>
>> When I uploaded my package to Bioconductor it passed all tests for the Linux OS,
>> but failed on the Windows Server. The error is below.
>>
>>
>> Warning: running command '"c:\MikTex2.9\miktex\bin\texify.exe" --quiet --pdf
>> "pathVar.tex" --max-iterations=20 -I
>> "E:/biocbld/bbs-3.3-bioc/R/share/texmf/tex/latex" -I
>> "E:/biocbld/bbs-3.3-bioc/R/share/texmf/bibtex/bst"' had status 1
>> Error in find_vignette_product(name, by = "texi2pdf", engine = engine) :
>>  Failed to locate the 'texi2pdf' output file (by engine 'utils::Sweave') for
>>  vignette with name 'pathVar'. The following files exist in directory '.':
>>  'outline_fig_2.pdf', 'pathVar-2SamDisc_1.pdf', 'pathVar-dens_1.pdf',
>>  'pathVar-diagnostics.pdf', 'pathVar-hist_1.pdf', 'pathVar.Rnw', 'pathVar.tex'
>> Calls: <Anonymous> -> find_vignette_product
>> Execution halted
>>
>> Also, here is a link to the build report. Does anyone know why this is
>> happening? When I build it locally on my mac, the vignette is made and building
>> the package is completed without any errors.
>>
>> http://bioconductor.org/checkResults/3.3/bioc-LATEST/pathVar/moscato2-buildsrc.html
>>
> 
> This is a known issue that has been reported to R-devel. It is also very
> difficult to reproduce because it only happens once in a while. I just built
> your package successfully on moscato2, and in fact in the build report that is
> coming out later today it also built successfully.
> So all you have to do is wait. ;)
> 
> Dan
> 
> 
>> Best,
>> Sam
>>
>>
>>       [[alternative HTML version deleted]]
>>
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