[Bioc-devel] TIMEOUTs on Morelia

[Dan Tenenbaum]

Actually, it does seem like there is a more complicated issue going on. I will investigate and report back here.

Thanks,
Dan


----- Original Message -----
> From: "Dan Tenenbaum" <dtenenba at fredhutch.org>
> To: "Hartley, Stephen (NIH/NHGRI) [F]" <stephen.hartley at nih.gov>
> Cc: "bioc-devel" <bioc-devel at r-project.org>
> Sent: Monday, February 1, 2016 10:11:54 AM
> Subject: Re: [Bioc-devel] TIMEOUTs on Morelia

> I think the morelia server was overloaded, so it was restarted yesterday around
> 11PM Seattle time, so I hope we will see fewer TIMEOUTs in today's build
> report.
> Dan
> 
> 
> ----- Original Message -----
>> From: "Hartley, Stephen (NIH/NHGRI) [F]" <stephen.hartley at nih.gov>
>> To: "bioc-devel" <bioc-devel at r-project.org>
>> Sent: Monday, February 1, 2016 10:06:11 AM
>> Subject: [Bioc-devel] TIMEOUTs on Morelia
> 
>> The current devel build for DESeq2 has status TIMEOUT on Morelia. This is odd
>> since the package builder gives it 40 minutes to complete, and it finishes in
>> less than 5 on zin2 and muscato2.
>> 
>> A bunch of packages that depend on or suggest DESeq2 also timeout on Morelia:
>> DiffBind, derfinder, DChIPRep, gage, phyloseq, rgsepd, systemPipeR, and TCC.
>> All of them time out after 40 minutes, but take less than 10 minutes to build
>> on zin2 and moscato2.
>> 
>> So I guess the question is: is it DESeq2, or is something wrong with the Morelia
>> server? I don't have an OSX-mavericks machine to test it all out on.
>> 
>> Is there any way to get previous daily build reports, or are they deleted daily?
>> 
>> -Steve
>> 
>>	[[alternative HTML version deleted]]
>> 
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