[Bioc-devel] TIMEOUTs on Morelia

[Michael Love]

​Thanks Stephen and Dan, sorry I haven't chased this down recently.

I have access to a Mac and will look into it now.

-Mike​

On Mon, Feb 1, 2016 at 1:45 PM, Dan Tenenbaum <dtenenba at fredhutch.org>
wrote:

> Actually, it does seem like there is a more complicated issue going on. I
> will investigate and report back here.
>
> Thanks,
> Dan
>
>
> ----- Original Message -----
> > From: "Dan Tenenbaum" <dtenenba at fredhutch.org>
> > To: "Hartley, Stephen (NIH/NHGRI) [F]" <stephen.hartley at nih.gov>
> > Cc: "bioc-devel" <bioc-devel at r-project.org>
> > Sent: Monday, February 1, 2016 10:11:54 AM
> > Subject: Re: [Bioc-devel] TIMEOUTs on Morelia
>
> > I think the morelia server was overloaded, so it was restarted yesterday
> around
> > 11PM Seattle time, so I hope we will see fewer TIMEOUTs in today's build
> > report.
> > Dan
> >
> >
> > ----- Original Message -----
> >> From: "Hartley, Stephen (NIH/NHGRI) [F]" <stephen.hartley at nih.gov>
> >> To: "bioc-devel" <bioc-devel at r-project.org>
> >> Sent: Monday, February 1, 2016 10:06:11 AM
> >> Subject: [Bioc-devel] TIMEOUTs on Morelia
> >
> >> The current devel build for DESeq2 has status TIMEOUT on Morelia. This
> is odd
> >> since the package builder gives it 40 minutes to complete, and it
> finishes in
> >> less than 5 on zin2 and muscato2.
> >>
> >> A bunch of packages that depend on or suggest DESeq2 also timeout on
> Morelia:
> >> DiffBind, derfinder, DChIPRep, gage, phyloseq, rgsepd, systemPipeR, and
> TCC.
> >> All of them time out after 40 minutes, but take less than 10 minutes to
> build
> >> on zin2 and moscato2.
> >>
> >> So I guess the question is: is it DESeq2, or is something wrong with
> the Morelia
> >> server? I don't have an OSX-mavericks machine to test it all out on.
> >>
> >> Is there any way to get previous daily build reports, or are they
> deleted daily?
> >>
> >> -Steve
> >>
> >>      [[alternative HTML version deleted]]
> >>
> >> _______________________________________________
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> >> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >
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>
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