[Bioc-devel] moving package from annotation to experiment data

[Kasper Daniel Hansen]

Also, I helped prepare the package for submission.  If you need a clean
repos or something to move it over, I am happy to provide that.  I am also
happy to provide an updated repos, with the stuff I am planning to fix.

On Fri, Dec 9, 2016 at 10:53 AM, Kasper Daniel Hansen <
kasperdanielhansen at gmail.com> wrote:

> And I realized this since I am currently updating these packages in devel
> following a change in minfi (where I move from eSet to SummarizedExperiment
> without GRanges).
>
> Best,
> Kasper
>
> On Fri, Dec 9, 2016 at 10:51 AM, Kasper Daniel Hansen <
> kasperdanielhansen at gmail.com> wrote:
>
>> It got added to the wrong repos.
>>
>> You'll see it matches the other
>>   FlowSorted.XX.450k packages
>> of which there are 3 experimental packages with different values of XX
>> (Blood, CordBlood, DLPFC).  This is reference data for 450k experiments on
>> sorted (isolated) cell types.  It is experimental data, but it is kind of
>> used in a annotation-like manner, for example in the estimateCellTypes
>> function in minfi where you basically take
>>   own samples + reference data
>> and get cell type composition estimates.  Since it is experiment data, I
>> think the right place is the experiment data part of the repos (the
>> packages are also big).
>>
>> Best,
>> Kasper
>>
>> On Fri, Dec 9, 2016 at 10:48 AM, Obenchain, Valerie <
>> Valerie.Obenchain at roswellpark.org> wrote:
>>
>>> Can you give me some background? Was this recently added or did it get
>>> added to the wrong repo?
>>>
>>> Val
>>>
>>>
>>> On 12/09/2016 07:42 AM, Kasper Daniel Hansen wrote:
>>> > The package
>>> >   FlowSorted.CordBloodNorway.450k
>>> > should be moved from Annotation to ExperimentData.  Not sure how to do
>>> this.
>>> >
>>> > Best,
>>> > Kasper
>>> >
>>> >       [[alternative HTML version deleted]]
>>> >
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>>> >
>>>
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