[Bioc-devel] "access forbidden" trying to add new data to experiment package

[Michael Love]

hi,

After checking out the data_store version, I get an svn error "access
forbidden". Can you remind me the proper steps (I tried to following
variations on the Source Code instructions for experiment packages)?

love:test/ $ svn co
https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/data_store/tximportData
A    tximportData/inst
A    tximportData/inst/extdata
A    tximportData/inst/extdata/cufflinks
A    tximportData/inst/extdata/cufflinks/isoforms.count_table
A    tximportData/inst/extdata/cufflinks/isoforms.attr_table
A    tximportData/inst/extdata/cufflinks/isoforms.fpkm_table
A    tximportData/inst/extdata/rsem
A    tximportData/inst/extdata/rsem/ERR188329
A    tximportData/inst/extdata/rsem/ERR188329/ERR188329.genes.results
A    tximportData/inst/extdata/rsem/ERR188356
A    tximportData/inst/extdata/rsem/ERR188356/ERR188356.genes.results
A    tximportData/inst/extdata/rsem/ERR188088
A    tximportData/inst/extdata/rsem/ERR188088/ERR188088.genes.results
A    tximportData/inst/extdata/rsem/ERR188288
A    tximportData/inst/extdata/rsem/ERR188288/ERR188288.genes.results
A    tximportData/inst/extdata/rsem/ERR188297
A    tximportData/inst/extdata/rsem/ERR188297/ERR188297.genes.results
A    tximportData/inst/extdata/rsem/ERR188021
A    tximportData/inst/extdata/rsem/ERR188021/ERR188021.genes.results
A    tximportData/inst/extdata/tx2gene.csv
A    tximportData/inst/extdata/salmon
A    tximportData/inst/extdata/salmon/ERR188329
A    tximportData/inst/extdata/salmon/ERR188329/cmd_info.json
A    tximportData/inst/extdata/salmon/ERR188329/quant.sf
A    tximportData/inst/extdata/salmon/ERR188356
A    tximportData/inst/extdata/salmon/ERR188356/quant.sf
A    tximportData/inst/extdata/salmon/ERR188356/cmd_info.json
A    tximportData/inst/extdata/salmon/ERR188088
A    tximportData/inst/extdata/salmon/ERR188088/quant.sf
A    tximportData/inst/extdata/salmon/ERR188088/cmd_info.json
A    tximportData/inst/extdata/salmon/ERR188288
A    tximportData/inst/extdata/salmon/ERR188288/quant.sf
A    tximportData/inst/extdata/salmon/ERR188288/cmd_info.json
A    tximportData/inst/extdata/salmon/ERR188297
A    tximportData/inst/extdata/salmon/ERR188297/cmd_info.json
A    tximportData/inst/extdata/salmon/ERR188297/quant.sf
A    tximportData/inst/extdata/salmon/ERR188021
A    tximportData/inst/extdata/salmon/ERR188021/cmd_info.json
A    tximportData/inst/extdata/salmon/ERR188021/quant.sf
A    tximportData/inst/extdata/kallisto
A    tximportData/inst/extdata/kallisto/ERR188329
A    tximportData/inst/extdata/kallisto/ERR188329/run_info.json
A    tximportData/inst/extdata/kallisto/ERR188329/abundance.tsv
A    tximportData/inst/extdata/kallisto/ERR188356
A    tximportData/inst/extdata/kallisto/ERR188356/run_info.json
A    tximportData/inst/extdata/kallisto/ERR188356/abundance.tsv
A    tximportData/inst/extdata/kallisto/ERR188088
A    tximportData/inst/extdata/kallisto/ERR188088/run_info.json
A    tximportData/inst/extdata/kallisto/ERR188088/abundance.tsv
A    tximportData/inst/extdata/kallisto/ERR188288
A    tximportData/inst/extdata/kallisto/ERR188288/abundance.tsv
A    tximportData/inst/extdata/kallisto/ERR188288/run_info.json
A    tximportData/inst/extdata/kallisto/ERR188297
A    tximportData/inst/extdata/kallisto/ERR188297/run_info.json
A    tximportData/inst/extdata/kallisto/ERR188297/abundance.tsv
A    tximportData/inst/extdata/kallisto/ERR188021
A    tximportData/inst/extdata/kallisto/ERR188021/run_info.json
A    tximportData/inst/extdata/kallisto/ERR188021/abundance.tsv
A    tximportData/inst/extdata/sailfish
A    tximportData/inst/extdata/sailfish/ERR188329
A    tximportData/inst/extdata/sailfish/ERR188329/cmd_info.json
A    tximportData/inst/extdata/sailfish/ERR188329/quant.sf
A    tximportData/inst/extdata/sailfish/ERR188356
A    tximportData/inst/extdata/sailfish/ERR188356/quant.sf
A    tximportData/inst/extdata/sailfish/ERR188356/cmd_info.json
A    tximportData/inst/extdata/sailfish/ERR188088
A    tximportData/inst/extdata/sailfish/ERR188088/cmd_info.json
A    tximportData/inst/extdata/sailfish/ERR188088/quant.sf
A    tximportData/inst/extdata/sailfish/ERR188288
A    tximportData/inst/extdata/sailfish/ERR188288/quant.sf
A    tximportData/inst/extdata/sailfish/ERR188288/cmd_info.json
A    tximportData/inst/extdata/sailfish/ERR188297
A    tximportData/inst/extdata/sailfish/ERR188297/quant.sf
A    tximportData/inst/extdata/sailfish/ERR188297/cmd_info.json
A    tximportData/inst/extdata/sailfish/ERR188021
A    tximportData/inst/extdata/sailfish/ERR188021/quant.sf
A    tximportData/inst/extdata/sailfish/ERR188021/cmd_info.json
A    tximportData/inst/extdata/samples.txt
A    tximportData/inst/extdata/samples_extended.txt
Checked out revision 4006.

love:tximportData/ $ cd inst/extdata
    [15:06:02]


Then I add new files:


love:extdata/ $ svn add kallisto_h5
    [15:06:19]
A         kallisto_h5
A         kallisto_h5/ERR188329
A         kallisto_h5/ERR188329/run_info.json
A  (bin)  kallisto_h5/ERR188329/abundance.h5
A         kallisto_h5/ERR188356
A         kallisto_h5/ERR188356/run_info.json
A  (bin)  kallisto_h5/ERR188356/abundance.h5
A         kallisto_h5/ERR188088
A         kallisto_h5/ERR188088/run_info.json
A  (bin)  kallisto_h5/ERR188088/abundance.h5
A         kallisto_h5/ERR188288
A         kallisto_h5/ERR188288/run_info.json
A  (bin)  kallisto_h5/ERR188288/abundance.h5
A         kallisto_h5/ERR188297
A  (bin)  kallisto_h5/ERR188297/abundance.h5
A         kallisto_h5/ERR188297/run_info.json
A         kallisto_h5/ERR188021
A         kallisto_h5/ERR188021/run_info.json
A  (bin)  kallisto_h5/ERR188021/abundance.h5

love:extdata/ $ svn commit -m "add kallisto HDF5 files"
    [15:06:27]
Adding         kallisto_h5
svn: E195023: Commit failed (details follow):
svn: E195023: Changing directory
'/Users/love/bioc/test/tximportData/inst/extdata/kallisto_h5' is
forbidden by the server
svn: E175013: Access to
'/bioc-data/!svn/txr/4006-1/trunk/experiment/data_store/tximportData/inst/extdata/kallisto_h5'
forbidden