[Bioc-devel] pdflatex not found on oaxaca (Mac OS X Mavericks (10.9.5)/x86_64) - R CMD check fails

[Martin Morgan]

On 12/04/2016 03:41 AM, Knoll, Max wrote:
> Hi,
>
>
> I'm stuck in the submission process and encounter the following error when CHECK is performed (on oaxaca):
>
>
> * checking PDF version of manual ... WARNING
> LaTeX errors when creating PDF version.
> This typically indicates Rd problems.
> * checking PDF version of manual without hyperrefs or index ... ERROR
> Re-running with no redirection of stdout/stderr.
> Hmm ... looks like a package
> Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,  :
>   pdflatex is not available
> Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,  :
>   pdflatex is not available
> Error in running tools::texi2pdf()
> You may want to clean up by 'rm -rf /tmp/RtmpP89k5T/Rd2pdf1781b755e60d0'
>
>
> (complete output: http://bioconductor.org/spb_reports/cnAnalysis450k_buildreport_20161204025335.html)
>
>
> This, however, occurs only on the Mac OS X (oaxaca) server, all builds and checks on the windows machine
>
> (and my local linux machine), do not show this error.
>
>
> I suspect a missing folder in the PATH variable (as reported elsewhere), but I should not be able to inject environmental variable
>
> changes on the testing system.
>
>
> Any ideas on how to proceed are appreciated.

I suggest ignoring this issue; it will be resolved.

Martin

>
>
>
> Best
>
> Max
>
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