[Bioc-devel] need advice on how to fix build error in windows

Dan Tenenbaum dtenenba at fredhutch.org
Fri Apr 8 23:36:54 CEST 2016

It's fine in today's build report.

On April 8, 2016 1:31:24 PM PDT, Krithika Bhuvaneshwar <kb472 at georgetown.edu> wrote:
>Dear Biconductor team,
>We are developers of newly accepted Bioconductor package CINdex. Our
>package is meant for DNA copy number data analysis, and the example
>data we use is from Affymetrix SNP 6.0 , so we use
>'pd.genomewidesnp.6' annotation package for Affymetrix SNP 6.0 in our
>Our package built without errors before the Windows tool chain error
>started. Now the error is "there is no package called
>'pd.genomewidesnp.6'. Execution halted".
>We see that package 'pd.genomewidesnp.6' is not present in BioC 3.3
>devel. So will the 'pd.genomewidesnp.6'  from Bio C 3.2 be carried
>over to the production version ?
>My question is: how do we go about resolving this error, which is
>dependent on another package ? Will fixing the windows tool chain fix
>the problem, in which case we just wait and watch ?
>We definitely want to have our package in BioC 3.3 release.. So any
>advice will help
>Bioc-devel at r-project.org mailing list

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