[Bioc-devel] ggbio error

Dan Tenenbaum dtenenba at fredhutch.org
Sat Apr 2 19:44:44 CEST 2016


Yes, the ggbio issue is fixed and this will be reflected in tomorrow's build report.
Dan


----- Original Message -----
> From: "Michael Lawrence" <lawrence.michael at gene.com>
> To: "Ludwig Geistlinger" <Ludwig.Geistlinger at bio.ifi.lmu.de>
> Cc: "bioc-devel" <bioc-devel at r-project.org>
> Sent: Saturday, April 2, 2016 4:00:20 AM
> Subject: Re: [Bioc-devel] ggbio error

> I think I fixed those things since the build report was generated.
> 
> Michael
> 
> On Sat, Apr 2, 2016 at 1:48 AM, Ludwig Geistlinger
> <Ludwig.Geistlinger at bio.ifi.lmu.de> wrote:
>> Hi,
>>
>> I am wondering whether this is only something temporary, but given that
>> the new Bioc release is upcoming and packages should pass R CMD
>> build/check by now, I am reporting that a ggbio R CMD check error
>>
>> http://bioconductor.org/checkResults/devel/bioc-LATEST/ggbio/zin2-checksrc.html
>>
>> causes ReportingTools to fail:
>>
>>> ERROR: dependency ‘ggbio’ is not available for package ‘ReportingTools’
>>
>> and, eventually, EnrichmentBrowser to fail:
>>
>>> ERROR: dependency ‘ReportingTools’ is not available for package
>> ‘EnrichmentBrowser’
>>
>> Which steps need to be undertaken here?
>>
>> Thx,
>> Ludwig
>>
>>
>> --
>> Dipl.-Bioinf. Ludwig Geistlinger
>>
>> Lehr- und Forschungseinheit für Bioinformatik
>> Institut für Informatik
>> Ludwig-Maximilians-Universität München
>> Amalienstrasse 17, 2. Stock, Büro A201
>> 80333 München
>>
>> Tel.: 089-2180-4067
>> eMail: Ludwig.Geistlinger at bio.ifi.lmu.de
>>
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> 
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