[Bioc-devel] build problem in package GSAR

[Dan Tenenbaum]

----- Original Message -----
> From: "Dan Tenenbaum" <dtenenba at fredhutch.org>
> To: "Rahmatallah, Yasir" <YRahmatallah at uams.edu>
> Cc: "bioc-devel" <bioc-devel at r-project.org>
> Sent: Friday, April 1, 2016 5:32:06 PM
> Subject: Re: [Bioc-devel] build problem in package GSAR

> The issue has already been fixed and that should be reflected in Sunday's build
> report. Recent emails to R-devel 

er, bioc-devel.

> have discussed the problem, which is related
> to a new toolchain for building windows packages, intended to be used with the
> soon-to-be-released R-3.3.0.
> Dan
> 
> 
> ----- Original Message -----
>> From: "Rahmatallah, Yasir" <YRahmatallah at uams.edu>
>> To: "Marc Carlson" <mcarlson at fredhutch.org>
>> Cc: "bioc-devel" <bioc-devel at r-project.org>
>> Sent: Friday, April 1, 2016 4:42:09 PM
>> Subject: [Bioc-devel] build problem in package GSAR
> 
>> Hi,
>> 
>> I am the author of package GSAR. Just today I noticed that the development
>> version 1.5.0 shows a build error under the Windows platform only. This error
>> was not there a couple of days ago when I last checked. The error message is
>> related to the 'igraph' package:
>> 
>> Error in base::.Call("R_igraph_make_weak_ref", key, value, finalizer,  :
>>  "R_igraph_make_weak_ref" not available for .Call() for package "igraph"
>> 
>> I'm not sure why this happened now since package 'igraph' (version 1.0.1) was
>> not updated since the last release of Bioconductor. If the error is related to
>> an update in 'igraph', the build error would have happened under all platforms
>> and not only under Windows!
>> To make things worse, today is the deadline for packages to pass ''R CMD build''
>> and ''R CMD check'' without error.
>> Help is appreciated.
>> 
>> Best Regards,
>> 
>> Yasir Rahmatallah, PhD
>> Postdoctoral Fellow
>> Department of Biomedical Informatics
>> University of Arkansas for Medical Sciences (UAMS)
>> 4301 West Markham, Slot #782
>> Little Rock, AR 72205
>> Office: +1-501-603-1674
>> 
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