[Bioc-devel] build problem in package GSAR

Rahmatallah, Yasir YRahmatallah at uams.edu
Sat Apr 2 01:42:09 CEST 2016


Hi,

I am the author of package GSAR. Just today I noticed that the development version 1.5.0 shows a build error under the Windows platform only. This error was not there a couple of days ago when I last checked. The error message is related to the 'igraph' package:

Error in base::.Call("R_igraph_make_weak_ref", key, value, finalizer,  :
  "R_igraph_make_weak_ref" not available for .Call() for package "igraph"

I'm not sure why this happened now since package 'igraph' (version 1.0.1) was not updated since the last release of Bioconductor. If the error is related to an update in 'igraph', the build error would have happened under all platforms and not only under Windows!
To make things worse, today is the deadline for packages to pass ''R CMD build'' and ''R CMD check'' without error.
Help is appreciated.

Best Regards,

Yasir Rahmatallah, PhD
Postdoctoral Fellow
Department of Biomedical Informatics
University of Arkansas for Medical Sciences (UAMS)
4301 West Markham, Slot #782
Little Rock, AR 72205
Office: +1-501-603-1674

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