[Bioc-devel] remove history vignettes

[Brian Long]

All,

Sorry about the slow reply.  This should now be resolved, looking at :

http://www.bioconductor.org/packages/release/bioc/html/ComplexHeatmap.html
   http://www.bioconductor.org/packages/devel/bioc/html/ComplexHeatmap.html

As you know, these pages are updated automatically, but a part of the
system that does that work was failing.  Please let us know if you have
further issues & thanks for reporting.

Thanks,
Brian

On Tue, Nov 17, 2015 at 12:12 PM, Leonardo Collado Torres <lcollado at jhu.edu>
wrote:

> Hi,
>
> I have the same problem with changes I recently made in the devel
> branch of `derfinder`. The old vignettes were compiled the last time
> on November 4th and the new ones on November 12th. Maybe in the next
> 1-2 days (with the Wednesday nightly build) the old ones will be
> dropped.
>
> Cheers,
> Leo
>
>
> On Tue, Nov 17, 2015 at 11:28 AM, Gabe Becker <becker.gabe at gene.com>
> wrote:
> > Well, You shouldn't expect the release branches to change at all based on
> > anything you do on trunk. They never will.
> >
> > The release branch is (almost completely frozen), you shouldn't be making
> > changes there generally. Changes in documentation are a grey area, I
> > suppose, but I try to avoid those as well. Basically, once released the
> > package should be "as-is", and exactly the same for all people using it
> at
> > any point in that release cycle.
> >
> > I'm not sure why the vignettes are still there on the devel landing page
> if
> > you have in fact bumped the package version in svn though. That likely
> > comes down to exactly how those splash pages are generated, which I don't
> > know.
> >
> > Best,
> > ~G
> >
> > On Tue, Nov 17, 2015 at 8:23 AM, 顾祖光 <jokergoo at gmail.com> wrote:
> >
> >> Thanks for your reply! I have already updated the package (also with
> >> bumping version numbers) for many times but these old vignettes are
> still
> >> there. They even exist in the release branch:
> >>
> http://www.bioconductor.org/packages/release/bioc/html/ComplexHeatmap.html
> >>
> >>
> >> On Tue, Nov 17, 2015 at 3:44 PM, Gabe Becker <becker.gabe at gene.com>
> wrote:
> >>
> >>> Zuguang,
> >>>
> >>> From what I can see, you have not updated the version number of your
> >>> package, so I suspect you'll find that none of your changes have
> propogated
> >>> at all, though I can't entirely swear to that.
> >>>
> >>> I believe Bioc packages only update in the repo (which I assume is also
> >>> when the splash-pages are updated) upon version bump.
> >>>
> >>> ~G
> >>>
> >>> On Tue, Nov 17, 2015 at 4:35 AM, 顾祖光 <jokergoo at gmail.com> wrote:
> >>>
> >>>> Hi,
> >>>>
> >>>> I am developing a package called ComplexHeatmap and re-format the
> >>>> vignettes
> >>>> recently. I deleted the old vignettes and created several new
> vignettes.
> >>>> But when I look at the web page of the package (
> >>>> http://bioconductor.org/packages/devel/bioc/html/ComplexHeatmap.html
> ),
> >>>> the
> >>>> old vignette files (the bottom three vignettes) are still there but
> they
> >>>> are already removed in svn
> >>>> (
> >>>>
> >>>>
> https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap/vignettes/
> >>>> )
> >>>>
> >>>> I guess it may because some rules of svn but I am not experienced for
> >>>> this
> >>>> and I commit changes through github mirror. I want to remove the
> bottom
> >>>> three vignettes which start without numbers ("Making Complex Heatmap",
> >>>> and
> >>>> the two "Quick Examples of Making Complex Heatmaps"). Can anyone give
> >>>> some
> >>>> clue how to do this?
> >>>>
> >>>> Thanks!
> >>>> Zuguang
> >>>>
> >>>>         [[alternative HTML version deleted]]
> >>>>
> >>>> _______________________________________________
> >>>> Bioc-devel at r-project.org mailing list
> >>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >>>>
> >>>
> >>>
> >>>
> >>> --
> >>> Gabriel Becker, Ph.D
> >>> Associate Scientist
> >>> Bioinformatics and Computational Biology
> >>> Genentech Research
> >>>
> >>
> >>
> >
> >
> > --
> > Gabriel Becker, Ph.D
> > Associate Scientist
> > Bioinformatics and Computational Biology
> > Genentech Research
> >
> >         [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > Bioc-devel at r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>

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