[Bioc-devel] remove history vignettes

[顾祖光]

That is great! Thank you!

On Thu, Nov 19, 2015 at 5:22 PM, Brian Long <brian at bioconductor.org> wrote:

> All,
>
> Sorry about the slow reply.  This should now be resolved, looking at :
>
> http://www.bioconductor.org/packages/release/bioc/html/ComplexHeatmap.html
>
> http://www.bioconductor.org/packages/devel/bioc/html/ComplexHeatmap.html
>
> As you know, these pages are updated automatically, but a part of the
> system that does that work was failing.  Please let us know if you have
> further issues & thanks for reporting.
>
> Thanks,
> Brian
>
> On Tue, Nov 17, 2015 at 12:12 PM, Leonardo Collado Torres <
> lcollado at jhu.edu>
> wrote:
>
> > Hi,
> >
> > I have the same problem with changes I recently made in the devel
> > branch of `derfinder`. The old vignettes were compiled the last time
> > on November 4th and the new ones on November 12th. Maybe in the next
> > 1-2 days (with the Wednesday nightly build) the old ones will be
> > dropped.
> >
> > Cheers,
> > Leo
> >
> >
> > On Tue, Nov 17, 2015 at 11:28 AM, Gabe Becker <becker.gabe at gene.com>
> > wrote:
> > > Well, You shouldn't expect the release branches to change at all based
> on
> > > anything you do on trunk. They never will.
> > >
> > > The release branch is (almost completely frozen), you shouldn't be
> making
> > > changes there generally. Changes in documentation are a grey area, I
> > > suppose, but I try to avoid those as well. Basically, once released the
> > > package should be "as-is", and exactly the same for all people using it
> > at
> > > any point in that release cycle.
> > >
> > > I'm not sure why the vignettes are still there on the devel landing
> page
> > if
> > > you have in fact bumped the package version in svn though. That likely
> > > comes down to exactly how those splash pages are generated, which I
> don't
> > > know.
> > >
> > > Best,
> > > ~G
> > >
> > > On Tue, Nov 17, 2015 at 8:23 AM, 顾祖光 <jokergoo at gmail.com> wrote:
> > >
> > >> Thanks for your reply! I have already updated the package (also with
> > >> bumping version numbers) for many times but these old vignettes are
> > still
> > >> there. They even exist in the release branch:
> > >>
> >
> http://www.bioconductor.org/packages/release/bioc/html/ComplexHeatmap.html
> > >>
> > >>
> > >> On Tue, Nov 17, 2015 at 3:44 PM, Gabe Becker <becker.gabe at gene.com>
> > wrote:
> > >>
> > >>> Zuguang,
> > >>>
> > >>> From what I can see, you have not updated the version number of your
> > >>> package, so I suspect you'll find that none of your changes have
> > propogated
> > >>> at all, though I can't entirely swear to that.
> > >>>
> > >>> I believe Bioc packages only update in the repo (which I assume is
> also
> > >>> when the splash-pages are updated) upon version bump.
> > >>>
> > >>> ~G
> > >>>
> > >>> On Tue, Nov 17, 2015 at 4:35 AM, 顾祖光 <jokergoo at gmail.com> wrote:
> > >>>
> > >>>> Hi,
> > >>>>
> > >>>> I am developing a package called ComplexHeatmap and re-format the
> > >>>> vignettes
> > >>>> recently. I deleted the old vignettes and created several new
> > vignettes.
> > >>>> But when I look at the web page of the package (
> > >>>>
> http://bioconductor.org/packages/devel/bioc/html/ComplexHeatmap.html
> > ),
> > >>>> the
> > >>>> old vignette files (the bottom three vignettes) are still there but
> > they
> > >>>> are already removed in svn
> > >>>> (
> > >>>>
> > >>>>
> >
> https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap/vignettes/
> > >>>> )
> > >>>>
> > >>>> I guess it may because some rules of svn but I am not experienced
> for
> > >>>> this
> > >>>> and I commit changes through github mirror. I want to remove the
> > bottom
> > >>>> three vignettes which start without numbers ("Making Complex
> Heatmap",
> > >>>> and
> > >>>> the two "Quick Examples of Making Complex Heatmaps"). Can anyone
> give
> > >>>> some
> > >>>> clue how to do this?
> > >>>>
> > >>>> Thanks!
> > >>>> Zuguang
> > >>>>
> > >>>>         [[alternative HTML version deleted]]
> > >>>>
> > >>>> _______________________________________________
> > >>>> Bioc-devel at r-project.org mailing list
> > >>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> > >>>>
> > >>>
> > >>>
> > >>>
> > >>> --
> > >>> Gabriel Becker, Ph.D
> > >>> Associate Scientist
> > >>> Bioinformatics and Computational Biology
> > >>> Genentech Research
> > >>>
> > >>
> > >>
> > >
> > >
> > > --
> > > Gabriel Becker, Ph.D
> > > Associate Scientist
> > > Bioinformatics and Computational Biology
> > > Genentech Research
> > >
> > >         [[alternative HTML version deleted]]
> > >
> > > _______________________________________________
> > > Bioc-devel at r-project.org mailing list
> > > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >
> > _______________________________________________
> > Bioc-devel at r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >
>
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>
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