[Bioc-devel] remove history vignettes

[Leonardo Collado Torres]

Hi,

I have the same problem with changes I recently made in the devel
branch of `derfinder`. The old vignettes were compiled the last time
on November 4th and the new ones on November 12th. Maybe in the next
1-2 days (with the Wednesday nightly build) the old ones will be
dropped.

Cheers,
Leo


On Tue, Nov 17, 2015 at 11:28 AM, Gabe Becker <becker.gabe at gene.com> wrote:
> Well, You shouldn't expect the release branches to change at all based on
> anything you do on trunk. They never will.
>
> The release branch is (almost completely frozen), you shouldn't be making
> changes there generally. Changes in documentation are a grey area, I
> suppose, but I try to avoid those as well. Basically, once released the
> package should be "as-is", and exactly the same for all people using it at
> any point in that release cycle.
>
> I'm not sure why the vignettes are still there on the devel landing page if
> you have in fact bumped the package version in svn though. That likely
> comes down to exactly how those splash pages are generated, which I don't
> know.
>
> Best,
> ~G
>
> On Tue, Nov 17, 2015 at 8:23 AM, 顾祖光 <jokergoo at gmail.com> wrote:
>
>> Thanks for your reply! I have already updated the package (also with
>> bumping version numbers) for many times but these old vignettes are still
>> there. They even exist in the release branch:
>> http://www.bioconductor.org/packages/release/bioc/html/ComplexHeatmap.html
>>
>>
>> On Tue, Nov 17, 2015 at 3:44 PM, Gabe Becker <becker.gabe at gene.com> wrote:
>>
>>> Zuguang,
>>>
>>> From what I can see, you have not updated the version number of your
>>> package, so I suspect you'll find that none of your changes have propogated
>>> at all, though I can't entirely swear to that.
>>>
>>> I believe Bioc packages only update in the repo (which I assume is also
>>> when the splash-pages are updated) upon version bump.
>>>
>>> ~G
>>>
>>> On Tue, Nov 17, 2015 at 4:35 AM, 顾祖光 <jokergoo at gmail.com> wrote:
>>>
>>>> Hi,
>>>>
>>>> I am developing a package called ComplexHeatmap and re-format the
>>>> vignettes
>>>> recently. I deleted the old vignettes and created several new vignettes.
>>>> But when I look at the web page of the package (
>>>> http://bioconductor.org/packages/devel/bioc/html/ComplexHeatmap.html),
>>>> the
>>>> old vignette files (the bottom three vignettes) are still there but they
>>>> are already removed in svn
>>>> (
>>>>
>>>> https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap/vignettes/
>>>> )
>>>>
>>>> I guess it may because some rules of svn but I am not experienced for
>>>> this
>>>> and I commit changes through github mirror. I want to remove the bottom
>>>> three vignettes which start without numbers ("Making Complex Heatmap",
>>>> and
>>>> the two "Quick Examples of Making Complex Heatmaps"). Can anyone give
>>>> some
>>>> clue how to do this?
>>>>
>>>> Thanks!
>>>> Zuguang
>>>>
>>>>         [[alternative HTML version deleted]]
>>>>
>>>> _______________________________________________
>>>> Bioc-devel at r-project.org mailing list
>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>>
>>>
>>>
>>>
>>> --
>>> Gabriel Becker, Ph.D
>>> Associate Scientist
>>> Bioinformatics and Computational Biology
>>> Genentech Research
>>>
>>
>>
>
>
> --
> Gabriel Becker, Ph.D
> Associate Scientist
> Bioinformatics and Computational Biology
> Genentech Research
>
>         [[alternative HTML version deleted]]
>
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