[Bioc-devel] Challenges with package installation on fresh R

Dan Tenenbaum dtenenba at fredhutch.org
Thu Jun 25 21:28:27 CEST 2015

----- Original Message -----
> From: "Vladislav Petyuk" <petyuk at gmail.com>
> To: Bioc-devel at r-project.org
> Sent: Thursday, June 25, 2015 12:16:50 PM
> Subject: [Bioc-devel]  Challenges with package installation on fresh R
> Hi all,
> I ran into a problem with dependencies during package installation.
> Here is an example that intends to reproduce the problem
> https://github.com/vladpetyuk/toypack
> Majority of the packages (in Imports/Depends/Suggests and their
> Imports/Depends/Suggests) install just fine.
> However there is a handful of packages ("DO.db", "GO.db",
> "org.Ce.eg.db",
> "org.Hs.eg.db" and "reactome.db") that are being skipped for not an
> obvious
> to me reason.
> In this toy example there is no use of those skipped packages. So it
> won't
> results in any kind of error.  But in the real package their lack
> results
> in errors.

You need to provide the complete output of R when you try and install the package.
The error is in that output somewhere. 


> Thank you,
> Vlad
> 	[[alternative HTML version deleted]]
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