[Bioc-devel] Challenges with package installation on fresh R

Vladislav Petyuk petyuk at gmail.com
Thu Jun 25 21:16:50 CEST 2015

Hi all,
I ran into a problem with dependencies during package installation.
Here is an example that intends to reproduce the problem


Majority of the packages (in Imports/Depends/Suggests and their
Imports/Depends/Suggests) install just fine.
However there is a handful of packages ("DO.db", "GO.db", "org.Ce.eg.db",
"org.Hs.eg.db" and "reactome.db") that are being skipped for not an obvious
to me reason.
In this toy example there is no use of those skipped packages. So it won't
results in any kind of error.  But in the real package their lack results
in errors.

Thank you,

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