[Bioc-devel] Challenges with package installation on fresh R
petyuk at gmail.com
Thu Jun 25 21:55:56 CEST 2015
Just added the full output to the README.md file
On Thu, Jun 25, 2015 at 12:28 PM, Dan Tenenbaum <dtenenba at fredhutch.org>
> ----- Original Message -----
> > From: "Vladislav Petyuk" <petyuk at gmail.com>
> > To: Bioc-devel at r-project.org
> > Sent: Thursday, June 25, 2015 12:16:50 PM
> > Subject: [Bioc-devel] Challenges with package installation on fresh R
> > Hi all,
> > I ran into a problem with dependencies during package installation.
> > Here is an example that intends to reproduce the problem
> > https://github.com/vladpetyuk/toypack
> > Majority of the packages (in Imports/Depends/Suggests and their
> > Imports/Depends/Suggests) install just fine.
> > However there is a handful of packages ("DO.db", "GO.db",
> > "org.Ce.eg.db",
> > "org.Hs.eg.db" and "reactome.db") that are being skipped for not an
> > obvious
> > to me reason.
> > In this toy example there is no use of those skipped packages. So it
> > won't
> > results in any kind of error. But in the real package their lack
> > results
> > in errors.
> You need to provide the complete output of R when you try and install the
> The error is in that output somewhere.
> > Thank you,
> > Vlad
> > [[alternative HTML version deleted]]
> > _______________________________________________
> > Bioc-devel at r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
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