[Bioc-devel] chromosome lengths (seqinfo) for supported BSgenome builds into GenomeInfoDb?
becker.gabe at gene.com
Fri Jun 5 22:48:26 CEST 2015
I dunno, standardizeSeqInfo just seems really long for a function name
users are going to have to call.
At the risk of annoying Herve further, what about
gr <- castSeqInfo(gr, "gh19")
On Fri, Jun 5, 2015 at 1:46 PM, Tim Triche, Jr. <tim.triche at gmail.com>
> maybe standardizeSeqinfo or fixSeqinfo is clearer after all
> Statistics is the grammar of science.
> Karl Pearson <http://en.wikipedia.org/wiki/The_Grammar_of_Science>
> On Fri, Jun 5, 2015 at 1:41 PM, Gabe Becker <becker.gabe at gene.com> wrote:
>> On Fri, Jun 5, 2015 at 1:39 PM, Tim Triche, Jr. <tim.triche at gmail.com>
>>> how about just
>>> gr <- addSeqinfo(gr, "hg19")
>> Add sounds like it's, well, adding rather than replacing (Which it
>> sometimes would do.
>> gr <- fixSeqInfo(gr, "hg19")
>> Gabriel Becker, Ph.D
>> Computational Biologist
>> Genentech Research
Gabriel Becker, Ph.D
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