[Bioc-devel] chromosome lengths (seqinfo) for supported BSgenome builds into GenomeInfoDb?

[Gabe Becker]

I dunno, standardizeSeqInfo just seems really long for a function name
users are going to have to call.

At the risk of annoying Herve further, what about

gr <- castSeqInfo(gr, "gh19")

?

~G

On Fri, Jun 5, 2015 at 1:46 PM, Tim Triche, Jr. <tim.triche at gmail.com>
wrote:

> maybe standardizeSeqinfo or fixSeqinfo is clearer after all
>
> Statistics is the grammar of science.
> Karl Pearson <http://en.wikipedia.org/wiki/The_Grammar_of_Science>
>
> On Fri, Jun 5, 2015 at 1:41 PM, Gabe Becker <becker.gabe at gene.com> wrote:
>
>>
>>
>> On Fri, Jun 5, 2015 at 1:39 PM, Tim Triche, Jr. <tim.triche at gmail.com>
>> wrote:
>>
>>> how about just
>>>
>>>  gr <- addSeqinfo(gr, "hg19")
>>>
>>
>>  Add sounds like it's, well, adding rather than replacing (Which it
>> sometimes would do.
>>
>>  gr <- fixSeqInfo(gr, "hg19")
>>
>>  instead?
>>
>>  ~G
>>
>>
>>  --
>>   Gabriel Becker, Ph.D
>> Computational Biologist
>> Genentech Research
>>
>
>


-- 
Gabriel Becker, Ph.D
Computational Biologist
Genentech Research

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