[Bioc-devel] chromosome lengths (seqinfo) for supported BSgenome builds into GenomeInfoDb?

Tim Triche, Jr. tim.triche at gmail.com
Fri Jun 5 22:46:06 CEST 2015


maybe standardizeSeqinfo or fixSeqinfo is clearer after all

Statistics is the grammar of science.
Karl Pearson <http://en.wikipedia.org/wiki/The_Grammar_of_Science>

On Fri, Jun 5, 2015 at 1:41 PM, Gabe Becker <becker.gabe at gene.com> wrote:

>
>
> On Fri, Jun 5, 2015 at 1:39 PM, Tim Triche, Jr. <tim.triche at gmail.com>
> wrote:
>
>> how about just
>>
>>  gr <- addSeqinfo(gr, "hg19")
>>
>
>  Add sounds like it's, well, adding rather than replacing (Which it
> sometimes would do.
>
>  gr <- fixSeqInfo(gr, "hg19")
>
>  instead?
>
>  ~G
>
>
>  --
>   Gabriel Becker, Ph.D
> Computational Biologist
> Genentech Research
>

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