[Bioc-devel] chromosome lengths (seqinfo) for supported BSgenome builds into GenomeInfoDb?

[Hervé Pagès]

On 06/05/2015 01:48 PM, Gabe Becker wrote:
> I dunno, standardizeSeqInfo just seems really long for a function name
> users are going to have to call.
>
> At the risk of annoying Herve further, what about
>
>     gr <- castSeqInfo(gr, "gh19")

grrrrr!

>
> ?
>
> ~G
>
> On Fri, Jun 5, 2015 at 1:46 PM, Tim Triche, Jr. <tim.triche at gmail.com
> <mailto:tim.triche at gmail.com>> wrote:
>
>     maybe standardizeSeqinfo or fixSeqinfo is clearer after all
>
>     Statistics is the grammar of science.
>     Karl Pearson <http://en.wikipedia.org/wiki/The_Grammar_of_Science>
>
>     On Fri, Jun 5, 2015 at 1:41 PM, Gabe Becker <becker.gabe at gene.com
>     <mailto:becker.gabe at gene.com>> wrote:
>
>
>
>         On Fri, Jun 5, 2015 at 1:39 PM, Tim Triche, Jr.
>         <tim.triche at gmail.com <mailto:tim.triche at gmail.com>> wrote:
>
>             how about just
>
>             gr <- addSeqinfo(gr, "hg19")
>
>
>         Add sounds like it's, well, adding rather than replacing (Which
>         it sometimes would do.
>
>         gr <- fixSeqInfo(gr, "hg19")
>
>         instead?
>
>         ~G
>
>
>         --
>         Gabriel Becker, Ph.D
>         Computational Biologist
>         Genentech Research
>
>
>
>
>
> --
> Gabriel Becker, Ph.D
> Computational Biologist
> Genentech Research

-- 
Hervé Pagès

Program in Computational Biology
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