[Bioc-devel] 'semantically rich' subsetting of SummarizedExperiments

[Tim Triche, Jr.]

Agreed with Sean, having tried implementing to "magical" alternative

--t

> On Sep 20, 2014, at 9:31 AM, Sean Davis <sdavis2 at mail.nih.gov> wrote:
> 
> Hi, Vince.
> 
> I'm coming a little late to the party, but I agree with Kasper's sentiment
> that the less "magical" approach of using subsetByXXX might be the cleaner
> way to go for the time being.
> 
> Sean
> 
> 
> On Sat, Sep 20, 2014 at 10:42 AM, Vincent Carey <stvjc at channing.harvard.edu>
> wrote:
> 
>> 
>> https://github.com/vjcitn/biocMultiAssay/blob/master/vignettes/SEresolver.Rnw
>> 
>> shows some modifications to [ that allow subsetting of SE by
>> gene or pathway name
>> 
>> it may be premature to work at the [ level.  Kasper suggested defining
>> a suite of subsetBy operations that would accomplish this
>> 
>> i think we could get something along these lines into the release without
>> too much more work.  votes?
>> 
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