[Bioc-devel] 'semantically rich' subsetting of SummarizedExperiments

Sean Davis sdavis2 at mail.nih.gov
Sat Sep 20 18:31:04 CEST 2014

Hi, Vince.

I'm coming a little late to the party, but I agree with Kasper's sentiment
that the less "magical" approach of using subsetByXXX might be the cleaner
way to go for the time being.


On Sat, Sep 20, 2014 at 10:42 AM, Vincent Carey <stvjc at channing.harvard.edu>

> https://github.com/vjcitn/biocMultiAssay/blob/master/vignettes/SEresolver.Rnw
> shows some modifications to [ that allow subsetting of SE by
> gene or pathway name
> it may be premature to work at the [ level.  Kasper suggested defining
> a suite of subsetBy operations that would accomplish this
> i think we could get something along these lines into the release without
> too much more work.  votes?
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