[Bioc-devel] report a minor bug in GenomicRanges

[Ou, Jianhong]

Yes, I am calling reduce on a GRanges object. I just hate any warning or
error message. That's all.

Yours Sincerely,

Jianhong Ou

LRB 670A
Program in Gene Function and Expression
364 Plantation Street Worcester,
MA 01605




On 3/21/14 1:26 PM, "Hervé Pagès" <hpages at fhcrc.org> wrote:

>Hi Jianhong,
>
>On 03/21/2014 07:01 AM, Ou, Jianhong wrote:
>> Hi,
>>
>> When I run sample code for reduce, I got Warning message:
>>    The 'with.mapping' argument is deprecated.
>>    Please use the 'with.revmap' argument instead.
>
>Not really a bug, just a warning that the 'with.mapping' arg is being
>replaced by the 'with.revmap' arg, except that 'with.revmap' is not
>available yet when reducing a GRanges object... sorry :-/ Will be in
>the next couple of days.
>
>Note that it's already available when reducing an IRanges object,
>but I suspect in your case you're calling reduce() on a GRanges object
>right?
>
>Thanks,
>H.
>
>>
>> Yours Sincerely,
>>
>> Jianhong Ou
>>
>> LRB 670A
>> Program in Gene Function and Expression
>> 364 Plantation Street Worcester,
>> MA 01605
>>
>> 	[[alternative HTML version deleted]]
>>
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>
>-- 
>Hervé Pagès
>
>Program in Computational Biology
>Division of Public Health Sciences
>Fred Hutchinson Cancer Research Center
>1100 Fairview Ave. N, M1-B514
>P.O. Box 19024
>Seattle, WA 98109-1024
>
>E-mail: hpages at fhcrc.org
>Phone:  (206) 667-5791
>Fax:    (206) 667-1319