[Bioc-devel] report a minor bug in GenomicRanges

Hervé Pagès hpages at fhcrc.org
Fri Mar 21 18:26:35 CET 2014

Hi Jianhong,

On 03/21/2014 07:01 AM, Ou, Jianhong wrote:
> Hi,
> When I run sample code for reduce, I got Warning message:
>    The 'with.mapping' argument is deprecated.
>    Please use the 'with.revmap' argument instead.

Not really a bug, just a warning that the 'with.mapping' arg is being
replaced by the 'with.revmap' arg, except that 'with.revmap' is not
available yet when reducing a GRanges object... sorry :-/ Will be in
the next couple of days.

Note that it's already available when reducing an IRanges object,
but I suspect in your case you're calling reduce() on a GRanges object


> Yours Sincerely,
> Jianhong Ou
> LRB 670A
> Program in Gene Function and Expression
> 364 Plantation Street Worcester,
> MA 01605
> 	[[alternative HTML version deleted]]
> _______________________________________________
> Bioc-devel at r-project.org mailing list
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Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
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