[Bioc-devel] report a minor bug in GenomicRanges

[Hervé Pagès]

Hi Jianhong,

On 03/21/2014 07:01 AM, Ou, Jianhong wrote:
> Hi,
>
> When I run sample code for reduce, I got Warning message:
>    The 'with.mapping' argument is deprecated.
>    Please use the 'with.revmap' argument instead.

Not really a bug, just a warning that the 'with.mapping' arg is being
replaced by the 'with.revmap' arg, except that 'with.revmap' is not
available yet when reducing a GRanges object... sorry :-/ Will be in
the next couple of days.

Note that it's already available when reducing an IRanges object,
but I suspect in your case you're calling reduce() on a GRanges object
right?

Thanks,
H.

>
> Yours Sincerely,
>
> Jianhong Ou
>
> LRB 670A
> Program in Gene Function and Expression
> 364 Plantation Street Worcester,
> MA 01605
>
> 	[[alternative HTML version deleted]]
>
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-- 
Hervé Pagès

Program in Computational Biology
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