[Bioc-devel] KEGGREST package is available in devel
dtenenba at fhcrc.org
Thu Jan 17 00:17:36 CET 2013
On Wed, Jan 16, 2013 at 1:00 PM, Kozo Nishida <knishida at riken.jp> wrote:
> Hi Dan,
> Thank you for developing this KEGGREST package, this package is very helpful.
> By the way, I have developed my own KEGGREST package for the same
> purpose as your KEGGREST.
> I would like to contribute your KEGGREST package.
> Is there github's pull request-like system in bioc devel?
You can fork this github repository:
Then send a pull request when you'd like me to review your changes.
>> Hi Bioconductors,
>> The KEGGREST package is now available in devel (Bioconductor 2.12).
>> KEGGREST is intended to replace the KEGGSOAP package, which is now deprecated.
>> KEGGSOAP does not work since KEGG shut down its SOAP server at the end
>> of 2012. Information about the transition from SOAP to REST is here:
>> KEGGREST is designed to closely follow the KEGG REST API which is
>> documented here:
>> The REST interface is simpler and in some ways more powerful than the
>> old SOAP interface.
>> However, there is some functionality in the SOAP API which KEGG did
>> not port to the REST API.
>> KEGGREST is in devel, which means it is still subject to change.
>> We welcome feedback about this package.
> Kozo Nishida
> knishida at riken.jp
> Laboratory for Biochemical Simulation
> OLABB, Osaka University 6-2-3, Furuedai, Suita, Osaka 565-0874, JAPAN
> Quantitative Biology Center, RIKEN
> Tel: +81-70-6800-3899
> Bioc-devel at r-project.org mailing list
More information about the Bioc-devel