[Bioc-devel] BioC 2.11 branch created

[Dan Tenenbaum]

On Tue, Oct 2, 2012 at 6:34 PM, Kasper Daniel Hansen
<kasperdanielhansen at gmail.com> wrote:
> So what exactly are the recommendations for useDevel and R version.

We were going to discuss this in our release announcement (still
forthcoming, as is the release), but since you ask:

>
> Right now I have a separate installation of R-2.15 using
> useDevel(TRUE).  What will happen after Bioc 2.11 has been pushed to a
> proper release?  How, if I am running R-2.15, do I choose between Bioc
> 2.10 and 2.11?
>

You'll be able to use this command (not enabled yet):
source("http://bioconductor.org/biocLite.R")
biocLite("BiocUpgrade")


> And if I run R-devel (2.16), will I automatically get the devel branch
> no matter whether or not I use useDevel(TRUE)?

Yes.

Dan


>
> Kasper
>
> On Tue, Oct 2, 2012 at 9:42 AM, Dan Tenenbaum <dtenenba at fhcrc.org> wrote:
>> On Tue, Oct 2, 2012 at 1:00 AM, Nicolas Delhomme <delhomme at embl.de> wrote:
>>> Hi Dan,
>>>
>>> First of all, thanks again for all the effort to make that release happen!
>>>
>>> Then, am I correct that for the new Bioc development version, we now need to switch to R-devel (R2.16)?
>>>
>>
>> Yes, BioC 2.12 (which will be the new devel version after today's
>> release) will work with R-devel (R-2.16).
>> Dan
>>
>>
>>> Cheers,
>>>
>>> Nico
>>>
>>> ---------------------------------------------------------------
>>> Nicolas Delhomme
>>>
>>> Genome Biology Computational Support
>>>
>>> European Molecular Biology Laboratory
>>>
>>> Tel: +49 6221 387 8310
>>> Email: nicolas.delhomme at embl.de
>>> Meyerhofstrasse 1 - Postfach 10.2209
>>> 69102 Heidelberg, Germany
>>> ---------------------------------------------------------------
>>>
>>>
>>>
>>>
>>>
>>> On 2 Oct 2012, at 02:24, Dan Tenenbaum wrote:
>>>
>>>> The BioC 2.11 branch is now ready.
>>>>
>>>> Remember, you always have access to 2 versions of your package:
>>>> the "release" and the "devel" versions.
>>>>
>>>> Right now the "release" version of your package (which is not
>>>> officially released yet but will be in the next 72 hours if
>>>> everything goes well) is in the 2.11 branch and accessible at:
>>>>
>>>>
>>>> https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/<PKGNAME>
>>>>
>>>> Only bug fixes and documentation improvements should go here.
>>>>
>>>> As always the "devel" version of your package is at:
>>>>
>>>> https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/<PKGNAME>
>>>>
>>>> Normal development of your package can now resume here.
>>>>
>>>> Please let us know if you have any questions.
>>>>
>>>> Thanks!
>>>>
>>>> Dan
>>>>
>>>> _______________________________________________
>>>> Bioc-devel at r-project.org mailing list
>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>
>>
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel