[Bioc-devel] Can we get a rheMac2 BSgenome?

[Hervé Pagès]

Hi Steve,

On 03/27/2012 01:10 PM, Steve Lianoglou wrote:
> For what it's worth, I whipped up a rheMac2 BSgenome object.
>
> The source package is here:
>
> http://cbio.mskcc.org/Public/Leslie/lianos/bioc2012/BSgenome.Mmulatta.UCSC.rheMac2.tar.gz
>
> The data I used to create it along w/ the seed file is here. Maybe it
> will be helpful as a starting point if you guys want to whip one
> together officially:
>
> http://cbio.mskcc.org/Public/Leslie/lianos/bioc2012/rheMac2.BSgenome-data.tgz

Thanks! I'll check this and add it to the repo.

Cheers,
H.

>
> I'm not sure if I got all the mask stuff right, so ... use at your own
> risk. I'll be pulling those things down by the end of the week or so.
>
> -steve
>
>
> On Tue, Mar 27, 2012 at 12:11 PM, Steve Lianoglou
> <mailinglist.honeypot at gmail.com>  wrote:
>> Howdy,
>>
>> How does bioc-core feel about hosting a BSgenome for the rhesus macaque?
>>
>> I'm taking a shot at forging my own now, but I guess it might be
>> generally useful (but perhaps not, since it hasn't landed in bioc
>> yet).
>>
>> Anyway, I'd be happy to send over a drop of the raw/source package w/
>> required data to whomever if it'll be helpful to get the genome "live"
>> for more people.
>>
>> -steve
>>
>>
>> --
>> Steve Lianoglou
>> Graduate Student: Computational Systems Biology
>>   | Memorial Sloan-Kettering Cancer Center
>>   | Weill Medical College of Cornell University
>> Contact Info: http://cbio.mskcc.org/~lianos/contact
>
>
>


-- 
Hervé Pagès

Program in Computational Biology
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