[Bioc-devel] Version not updated on bioconductor site

[Tim Yates]

Ahhh, I hadn't seen the error for 1.7.8. That's me writing a stupid unit
test that works locally as I have MySQL on localhost.  I'll fix that now.

Not sure what the warnings:

> S3 methods shown with full name in documentation object 'xmapcore.all':
>   Oall.arrays¹ Oall.chromosomes¹ Oall.domains¹ Oall.est_exons¹
>   Oall.est_genes¹ Oall.est_transcripts¹ Oall.exons¹ Oall.genes¹
>   Oall.prediction_transcripts¹ Oall.probes¹ Oall.probesets¹
>   Oall.proteins¹ Oall.symbols¹ Oall.synonyms¹ Oall.transcripts¹
> 
> The \usage entries for S3 methods should use the \method markup and not
> their full name.

Are though...  I guess something has changed in the dev version of R as I'm
not seeing thm here...

Time for some searchng and reading ;-)

Thanks again!

Tim

On 08/08/2011 20:19, "Hervé Pagès" <hpages at fhcrc.org> wrote:

> Hi Tim, Vince,
> 
> Again some build system turbulences. The build report for devel is now
> updated:
> 
>    http://bioconductor.org/checkResults/2.9/bioc-LATEST/
> 
> but xmapcore 1.7.8 won't propagate to our public repo because it didn't
> pass check.
> 
> For the release version (1.6.2), it should propagate tonight around
> midnight (Seattle time).
> 
> Let me know if you have further questions.
> 
> Cheers,
> H.
> 
> 
> On 11-08-08 05:36 AM, Vincent Carey wrote:
>> the build-check reports seem to date back to 4 august, so perhaps this is a
>> vacation related pause.  i did an svn up on my archive and i saw 1.7.8, so i
>> think the archive is where you want it to be, just want the build system to
>> catch up
>> 
>> see
>> 
>> http://bioconductor.org/checkResults/
>> 
>> 
>> 
>> On Mon, Aug 8, 2011 at 4:26 AM, Tim Yates<tyates at picr.man.ac.uk>  wrote:
>> 
>>> Hi all!
>>> 
>>> I have fixed a bug in xmapcore release (which is now up to v1.6.2) and
>>> added
>>> some functionality to devel (now up to v1.7.8), but the bioconductor site
>>> seems to have not picked up the changes...
>>> 
>>> Could it be that I am using git-svn?  Is this a known issue?
>>> 
>>> Cheers,
>>> 
>>> Tim
>>> --------------------------------------------------------
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>> 
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