[Bioc-devel] biocLite() on R-devel installs BioC 2.7

[Robert Castelo]

thanks Dan!!
robert.

On Mon, 2010-10-25 at 11:11 -0700, Dan Tenenbaum wrote:
> On Mon, Oct 25, 2010 at 3:08 AM, Robert Castelo <robert.castelo at upf.edu> wrote:
> > hi,
> >
> > today i installed the current R-devel in order to resume development of
> > my package on the development branch, but once R-devel (=2.13) is
> > installed, the biocLite() function installs BioC 2.7 instead of BioC 2.8
> > while at the build/check results page in
> >
> > http://bioconductor.org/checkResults/2.8/bioc-LATEST
> >
> > everything looks like the devel branch is properly created. here is what
> > it get when i do biocLite() on R 2.13:
> >
> > source("http://www.bioconductor.org/biocLite.R")
> > BioC_mirror = http://www.bioconductor.org
> > Change using chooseBioCmirror().
> > biocLite()
> > Using R version 2.13.0, biocinstall version 2.7.4.
> > Installing Bioconductor version 2.7 packages:
> >  [1] "affy"          "affydata"      "affyPLM"       "affyQCReport"
> >  [5] "annaffy"       "annotate"      "Biobase"       "biomaRt"
> >  [9] "Biostrings"    "DynDoc"        "gcrma"         "genefilter"
> > [13] "geneplotter"   "GenomicRanges" "hgu95av2.db"   "limma"
> > [17] "marray"        "multtest"      "vsn"           "xtable"
> > Please wait...
> >
> > [... installation follows without problems ...]
> >
> > then i load Biobase and the session information says the following:
> >
> > library(Biobase)
> > [.. output removed .. ]
> > sessionInfo()
> > R version 2.13.0 Under development (unstable) (2010-10-24 r53413)
> > Platform: x86_64-unknown-linux-gnu (64-bit)
> >
> > locale:
> > [1] C
> >
> > attached base packages:
> > [1] stats     graphics  grDevices utils     datasets  methods
> > base
> >
> > other attached packages:
> > [1] Biobase_2.10.0
> >
> >
> > while on the website, the development Biobase version is 2.11
> >
> >
> 
> This is fixed now.
> Thanks!
> Dan
>