[Bioc-devel] biocLite() on R-devel installs BioC 2.7
Robert Castelo
robert.castelo at upf.edu
Mon Oct 25 12:08:04 CEST 2010
hi,
today i installed the current R-devel in order to resume development of
my package on the development branch, but once R-devel (=2.13) is
installed, the biocLite() function installs BioC 2.7 instead of BioC 2.8
while at the build/check results page in
http://bioconductor.org/checkResults/2.8/bioc-LATEST
everything looks like the devel branch is properly created. here is what
it get when i do biocLite() on R 2.13:
source("http://www.bioconductor.org/biocLite.R")
BioC_mirror = http://www.bioconductor.org
Change using chooseBioCmirror().
biocLite()
Using R version 2.13.0, biocinstall version 2.7.4.
Installing Bioconductor version 2.7 packages:
[1] "affy" "affydata" "affyPLM" "affyQCReport"
[5] "annaffy" "annotate" "Biobase" "biomaRt"
[9] "Biostrings" "DynDoc" "gcrma" "genefilter"
[13] "geneplotter" "GenomicRanges" "hgu95av2.db" "limma"
[17] "marray" "multtest" "vsn" "xtable"
Please wait...
[... installation follows without problems ...]
then i load Biobase and the session information says the following:
library(Biobase)
[.. output removed .. ]
sessionInfo()
R version 2.13.0 Under development (unstable) (2010-10-24 r53413)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] C
attached base packages:
[1] stats graphics grDevices utils datasets methods
base
other attached packages:
[1] Biobase_2.10.0
while on the website, the development Biobase version is 2.11
i guess i should have been getting the BioC 2.8 bundle, right?
cheers,
robert.
More information about the Bioc-devel
mailing list