[Bioc-devel] Rgraphviz error in Bioconductor 2.2 build for windows

[Robert Gentleman]

Hi Raffaele,
   Yes, we are trying to sort out the last set of problems with specific 
builds (Windows in this case seems to be causing a handful of minor 
annoyances).  Look for most of it to be cleaned up this week.

  best wishes
    Robert


rcaloger wrote:
> Hi,
> since my package oneChannelGUI suggests Rgraphviz I realized that, in 
> Bioconductor 2.2 release, the windows version for Rgraphviz
> is not available due to an error in compilation example compilation.
> 
> checking examples ... ERROR
> Running examples in 'Rgraphviz-Ex.R' failed.
> The error most likely occurred in:
> 
>> ### * agwrite
>>
>> flush(stderr()); flush(stdout())
>>
>> ### Name: agwrite
>> ### Title: A function to write a Ragraph object to a file
>> ### Aliases: agwrite agread
>> ### Keywords: graphs
>>
>> ### ** Examples
>>
>> V <- letters[1:10]
>> M <- 1:4
>> g1 <- randomGraph(V, M, .2)
>> z <- agopen(g1,"foo",layout=FALSE)
>>
> 
> 
> Actually I got around using the Rgraphviz from bioconductor 2.1, but I 
> would like to know if it will be possible to fix the error.
> Cheers
> Raffaele
> 

-- 
Robert Gentleman, PhD
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M2-B876
PO Box 19024
Seattle, Washington 98109-1024
206-667-7700
rgentlem at fhcrc.org