[Bioc-devel] Package Home Pages

[Laurent Gautier]

There seems to be at least one other issue with names:

http://fgc.lsi.umich.edu/cgi-bin/blosxom.cgi/GSEA

returns information for all packages with a name starting with GSEA.
Same story with affy.

L.


2008/7/18 Diego Diez <diez at kuicr.kyoto-u.ac.jp>:
> Hi, just noticed that this works:
>
> http://fgc.lsi.umich.edu/cgi-bin/blosxom.cgi/aroma
>
> i.e. without the ".light" and also in that page there is a strange
> reference to a .light package:
>
> http://fgc.lsi.umich.edu/cgi-bin/blosxom.cgi/aroma/.light
>
> i guess there is some issue with the dot character.
>
> Diego
>
> On Fri, Jul 18, 2008 at 8:42 AM, Patrick Aboyoun <paboyoun at fhcrc.org> wrote:
>> Henrik,
>> I provided links to the existing Bioconductor changelog blosxom blog at the
>> University of Michigan. With the Bioconductor manifest growing at such a
>> rapid pace, my guess is that the newer packages haven't yet made the blog.
>>
>>
>> Patrick
>>
>>
>>
>> Henrik Bengtsson wrote:
>>>
>>> Thanks. Looks good.
>>>
>>> FYI, when I go to the package specifics for aroma.light
>>> [http://fgc.lsi.umich.edu/cgi-bin/blosxom.cgi/aroma.light/] there is a
>>> somewhat poetic message delivered in red:
>>>
>>> "Error: I'm afraid this is the first I've heard of a "light" flavoured
>>> Blosxom. Try dropping the "/+light" bit from the end of the URL."
>>>
>>> /Henrik
>>>
>>>
>>> On Thu, Jul 17, 2008 at 3:54 PM, Patrick Aboyoun <paboyoun at fhcrc.org>
>>> wrote:
>>>
>>>>
>>>> I just modified the build system to add "Bioconductor Changelog" links to
>>>> the "Multiple platform build/check report" pages. To see an example of
>>>> these
>>>> links go to
>>>>
>>>> http://bioconductor.org/checkResults/2.2/bioc-LATEST/
>>>>
>>>> and look for the Bioconductor Changelog links. Similar links will be
>>>> added
>>>> to the BioC 2.3 report when it is created later tonight.
>>>>
>>>> Given that the changelog is geared towards developers, I did not include
>>>> a
>>>> link in the package home pages that Wolfgang referred to because it could
>>>> fall into the category of too much information for a general user of the
>>>> package. If the Bioconductor development community believes we should
>>>> include a link on the package home pages as well, I will add them. It
>>>> doesn't take much effort to change the infrastructure.
>>>>
>>>>
>>>> Cheers,
>>>> Patrick
>>>>
>>>>
>>>>
>>>> Patrick Aboyoun wrote:
>>>>
>>>>>
>>>>> Sean and Wolfgang,
>>>>> I think these two enhancements to the bioconductor.org website would be
>>>>> very useful and not too much work to implement. I'll add them on the
>>>>> website
>>>>> task list and send out a message to this group when they are
>>>>> implemented. If
>>>>> there are any other related ideas, keep them coming. It is easier to
>>>>> implement them all at once, rather than one at a time.
>>>>>
>>>>>
>>>>> Patrick
>>>>>
>>>>>
>>>>> Sean Davis wrote:
>>>>>
>>>>>>
>>>>>> On Fri, Jul 11, 2008 at 6:58 AM, Wolfgang Huber <huber at ebi.ac.uk>
>>>>>> wrote:
>>>>>>
>>>>>>
>>>>>>>
>>>>>>> Hi all,
>>>>>>>
>>>>>>> I like the package overview pages, such as
>>>>>>> http://www.bioconductor.org/packages/devel/bioc/html/cellHTS2.html
>>>>>>>
>>>>>>> Would it be possible that they also link to the output of, for
>>>>>>> example:
>>>>>>>
>>>>>>> svn log --username readonly --password readonly \
>>>>>>> https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gcrma
>>>>>>>
>>>>>>> which any of our users can run (but I assume most wouldn't know how
>>>>>>> to)?
>>>>>>>
>>>>>>> This additional service to our users may also encourage pkg developers
>>>>>>> to be more precise in their svn log entries :)
>>>>>>>
>>>>>>>
>>>>>>
>>>>>> Hi, Wolfgang.  I agree this would be a simple and useful addition for
>>>>>> the devel archives.  Since we already have the bioconductor change log
>>>>>> in place, it would be trivial to change the HTML on the devel pages to
>>>>>> include a link like:
>>>>>>
>>>>>> http://fgc.lsi.umich.edu/cgi-bin/blosxom.cgi/cellHTS2
>>>>>>
>>>>>> Sean
>>>>>>
>>>>>> _______________________________________________
>>>>>> Bioc-devel at stat.math.ethz.ch mailing list
>>>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>>>>
>>>>>>
>>>>>
>>>>> _______________________________________________
>>>>> Bioc-devel at stat.math.ethz.ch mailing list
>>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>>>
>>>>
>>>> _______________________________________________
>>>> Bioc-devel at stat.math.ethz.ch mailing list
>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>>
>>>>
>>
>> _______________________________________________
>> Bioc-devel at stat.math.ethz.ch mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>
>
>
> --
> Diego Diez, Ph
> Bioinformatics center,
> Institute for Chemical Research,
> Kyoto University.
> Gokasho, Uji, Kyoto 611-0011 JAPAN
> diez at kuicr.kyoto-u.ac.jp
>
> _______________________________________________
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> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>