[Bioc-devel] Package Home Pages

[Diego Diez]

Hi, just noticed that this works:

http://fgc.lsi.umich.edu/cgi-bin/blosxom.cgi/aroma

i.e. without the ".light" and also in that page there is a strange
reference to a .light package:

http://fgc.lsi.umich.edu/cgi-bin/blosxom.cgi/aroma/.light

i guess there is some issue with the dot character.

Diego

On Fri, Jul 18, 2008 at 8:42 AM, Patrick Aboyoun <paboyoun at fhcrc.org> wrote:
> Henrik,
> I provided links to the existing Bioconductor changelog blosxom blog at the
> University of Michigan. With the Bioconductor manifest growing at such a
> rapid pace, my guess is that the newer packages haven't yet made the blog.
>
>
> Patrick
>
>
>
> Henrik Bengtsson wrote:
>>
>> Thanks. Looks good.
>>
>> FYI, when I go to the package specifics for aroma.light
>> [http://fgc.lsi.umich.edu/cgi-bin/blosxom.cgi/aroma.light/] there is a
>> somewhat poetic message delivered in red:
>>
>> "Error: I'm afraid this is the first I've heard of a "light" flavoured
>> Blosxom. Try dropping the "/+light" bit from the end of the URL."
>>
>> /Henrik
>>
>>
>> On Thu, Jul 17, 2008 at 3:54 PM, Patrick Aboyoun <paboyoun at fhcrc.org>
>> wrote:
>>
>>>
>>> I just modified the build system to add "Bioconductor Changelog" links to
>>> the "Multiple platform build/check report" pages. To see an example of
>>> these
>>> links go to
>>>
>>> http://bioconductor.org/checkResults/2.2/bioc-LATEST/
>>>
>>> and look for the Bioconductor Changelog links. Similar links will be
>>> added
>>> to the BioC 2.3 report when it is created later tonight.
>>>
>>> Given that the changelog is geared towards developers, I did not include
>>> a
>>> link in the package home pages that Wolfgang referred to because it could
>>> fall into the category of too much information for a general user of the
>>> package. If the Bioconductor development community believes we should
>>> include a link on the package home pages as well, I will add them. It
>>> doesn't take much effort to change the infrastructure.
>>>
>>>
>>> Cheers,
>>> Patrick
>>>
>>>
>>>
>>> Patrick Aboyoun wrote:
>>>
>>>>
>>>> Sean and Wolfgang,
>>>> I think these two enhancements to the bioconductor.org website would be
>>>> very useful and not too much work to implement. I'll add them on the
>>>> website
>>>> task list and send out a message to this group when they are
>>>> implemented. If
>>>> there are any other related ideas, keep them coming. It is easier to
>>>> implement them all at once, rather than one at a time.
>>>>
>>>>
>>>> Patrick
>>>>
>>>>
>>>> Sean Davis wrote:
>>>>
>>>>>
>>>>> On Fri, Jul 11, 2008 at 6:58 AM, Wolfgang Huber <huber at ebi.ac.uk>
>>>>> wrote:
>>>>>
>>>>>
>>>>>>
>>>>>> Hi all,
>>>>>>
>>>>>> I like the package overview pages, such as
>>>>>> http://www.bioconductor.org/packages/devel/bioc/html/cellHTS2.html
>>>>>>
>>>>>> Would it be possible that they also link to the output of, for
>>>>>> example:
>>>>>>
>>>>>> svn log --username readonly --password readonly \
>>>>>> https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gcrma
>>>>>>
>>>>>> which any of our users can run (but I assume most wouldn't know how
>>>>>> to)?
>>>>>>
>>>>>> This additional service to our users may also encourage pkg developers
>>>>>> to be more precise in their svn log entries :)
>>>>>>
>>>>>>
>>>>>
>>>>> Hi, Wolfgang.  I agree this would be a simple and useful addition for
>>>>> the devel archives.  Since we already have the bioconductor change log
>>>>> in place, it would be trivial to change the HTML on the devel pages to
>>>>> include a link like:
>>>>>
>>>>> http://fgc.lsi.umich.edu/cgi-bin/blosxom.cgi/cellHTS2
>>>>>
>>>>> Sean
>>>>>
>>>>> _______________________________________________
>>>>> Bioc-devel at stat.math.ethz.ch mailing list
>>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>>>
>>>>>
>>>>
>>>> _______________________________________________
>>>> Bioc-devel at stat.math.ethz.ch mailing list
>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>>
>>>
>>> _______________________________________________
>>> Bioc-devel at stat.math.ethz.ch mailing list
>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>
>>>
>
> _______________________________________________
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> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>



-- 
Diego Diez, Ph
Bioinformatics center,
Institute for Chemical Research,
Kyoto University.
Gokasho, Uji, Kyoto 611-0011 JAPAN
diez at kuicr.kyoto-u.ac.jp